The CMakeLists.txt file after my signature works correctly in linux
with:
mkdir build
cd build
cmake ..
make
but in mingw64 this:
mkdir build
cd build
cmake -G "MSYS Makefiles" ..
make
fails when it tries to link the first executable (which happens to be
pockmark.exe for some reason) because it has failed to create the
directories /tmp/testinstall and /tmp/testinstall/bin. That should
happen at this line:
FILE(MAKE_DIRECTORY ${CMAKE_RUNTIME_OUTPUT_DIRECTORY})
The cmake versions are nearly identical:
mingw64 3.15.5
linux 3.15.3
The path for /tmp has no spaces in it: "C:\progs\msys64\tmp".
Anybody see what the problem is???
Thanks,
David Mathog
mat...@caltech.edu
Manager, Sequence Analysis Facility, Biology Division, Caltech
#####################################################
#problem CMakeLists.txt file
#####################################################
# revised because older versions broke when working with cmake 3
# 2010-01-23
########################
cmake_minimum_required (VERSION 3.5) #for multiple file copy
project(drm_tools)
#Default is to install man but not html. Change this if it is needed
SET(DO_MAN 1)
SET(DO_HTML)
if (UNIX)
SET(FS9 -Wall -std=c99 -pedantic -O3)
SET(FS10)
SET(FS11)
SET(FS12 mt19937ar_drm.c)
endif (UNIX)
if (WIN32)
# Despite the -std=c99 switch that standard is not achieved by the
compiler
# unless __USE_MINGW_ANSI_STDIO is also specified.
# Leave it off and strtof() does not return errno and "inf" is
"1.#INF00".
#
### works OK now without -DMSCRTL (was for c89 library) and -Wno-format
(all OK now)
###SET(FS9 -Wall -std=c99 -pedantic -DMSCRTL -D__USE_MINGW_ANSI_STDIO
-Wno-format)
SET(FS9 -Wall -std=c99 -pedantic -D__USE_MINGW_ANSI_STDIO -O3)
SET(FS10 -DUSE_WINDOWS)
SET(FS11 windows-mmap.c)
SET(FS12 mt19937ar_drm.c)
endif (WIN32)
###################################################################
#for dmath use first form if test_dmath.sh will be run, else second
#USETOK tests a mode used in extract too, and it is more convenient to
#debug it in test_math. However, it should NOT be compiled in when
#dmath is used otherwise.
###################################################################
#SET(FS13 -DPROG_TEST_MATH -DUSETOK)
SET(FS13 -DPROG_TEST_MATH)
SET(FS14 -D_POSIX_C_SOURCE=200112L)
#SET(CMAKE_INSTALL_PREFIX "/usr/local")
SET(CMAKE_INSTALL_PREFIX "/tmp/testinstall")
SET(CMAKE_RUNTIME_OUTPUT_DIRECTORY ${CMAKE_INSTALL_PREFIX}/bin)
SET(MAN_INSTALL_DIR ${CMAKE_INSTALL_PREFIX}/man/man1)
FILE(MAKE_DIRECTORY ${CMAKE_RUNTIME_OUTPUT_DIRECTORY})
if (DO_MAN)
FILE(GLOB MAN_FILES "${CMAKE_CURRENT_SOURCE_DIR}/*.1")
FILE(MAKE_DIRECTORY ${MAN_INSTALL_DIR})
#install man pages
ADD_CUSTOM_TARGET(man ALL
${CMAKE_COMMAND} -E copy ${MAN_FILES}
${MAN_INSTALL_DIR}
COMMENT "Copying all man pages")
endif (DO_MAN)
if (DO_HTML)
SET(HTML_INSTALL_DIR ${CMAKE_INSTALL_PREFIX}/html)
FILE(GLOB HTML_FILES "${CMAKE_CURRENT_SOURCE_DIR}/*.html")
FILE(MAKE_DIRECTORY ${HTML_INSTALL_DIR})
#install html pages
ADD_CUSTOM_TARGET(html ALL
${CMAKE_COMMAND} -E copy ${HTML_FILES}
${HTML_INSTALL_DIR}
COMMENT "Copying all html pages")
endif (DO_HTML)
add_executable(accudate accudate.c )
if (UNIX)
add_executable(binformat binformat.c )
endif (UNIX)
if (WIN32)
add_executable(binformat binformat.c )
endif (WIN32)
add_executable(binload binload.c )
add_executable(binorder binorder.c ${FS11} ${FS12} )
add_executable(binreplace binreplace.c )
add_executable(binsplit binsplit.c )
add_executable(chardiff chardiff.c )
add_executable(columnadd columnadd.c )
add_executable(datasniffer datasniffer.c )
add_executable(dmath test_math.c math_funcs.c )
add_executable(execinput execinput.c )
add_executable(extract extract.c math_funcs.c )
add_executable(indexed_text indexed_text.c ${FS11} )
add_executable(mbin mbin.c )
add_executable(mbout mbout.c )
add_executable(mdump mdump.c )
if (UNIX)
add_executable(msgqueue msgqueue.c )
endif (UNIX)
add_executable(pockmark pockmark.c ${FS12} )
add_executable(tarsieve tarsieve.c )
#
target_compile_options(accudate PRIVATE ${FS9})
target_compile_options(binformat PRIVATE ${FS9} ${FS14})
target_compile_options(binload PRIVATE ${FS9})
target_compile_options(binorder PRIVATE ${FS9} ${FS10} ${FS14})
target_compile_options(binreplace PRIVATE ${FS9})
target_compile_options(binsplit PRIVATE ${FS9} ${FS10} )
target_compile_options(chardiff PRIVATE ${FS9})
target_compile_options(columnadd PRIVATE ${FS9})
target_compile_options(datasniffer PRIVATE ${FS9})
target_compile_options(dmath PRIVATE ${FS9} ${FS13} )
target_compile_options(execinput PRIVATE ${FS9} -D_GNU_SOURCE
${FS10})
target_compile_options(extract PRIVATE ${FS9} -DMAXINFILE=40)
target_compile_options(indexed_text PRIVATE ${FS9} ${FS10} ${FS14})
target_compile_options(mbin PRIVATE ${FS9})
target_compile_options(mbout PRIVATE ${FS9} -D_POSIX_SOURCE)
target_compile_options(mdump PRIVATE ${FS9})
if (UNIX)
target_compile_options(msgqueue PRIVATE ${FSA} -DHAS__MSG_CBYTES
-D_XOPEN_SOURCE)
endif (UNIX)
target_compile_options(pockmark PRIVATE ${FS9})
target_compile_options(tarsieve PRIVATE ${FS9})
#
target_link_libraries(datasniffer PRIVATE -lm)
target_link_libraries(dmath PRIVATE -lm)
target_link_libraries(extract PRIVATE -lm -lpcre)
target_link_libraries(tarsieve PRIVATE -lpcre)
#
#####################################################
#
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