Hi, Everytime we have a new data from medical clinics, we do the following steps from MartEditor GUI in order to update biomart:
File => Naive File => import File => update all File => export Just because of this manual step, we cannot script/automate our whole data upload process. It will be great if we can script the above functionality. Do you reckon that MartScript will help us? I am going to IMGC, Crete, Greece in October. Please let me know if you will be there then we can discuss this further. Thanks. Best Regards, Hassan http://cern.ch/ahmadh/portfolio > Hi! > > You might be interested in MartScript, > http://github.com/joejimbo/MartScript, which can be used to > automatically create Ensembl (and related) marts. > > I do not know your database structure, but perhaps it would work for > you with some minor modifications as well. The major downside of using > MartScript right now is obvious: I have been too lazy to document it > properly yet. If you have a go at it, please let me know and perhaps > we can figure out to get it working together. Are you around at Genome > Informatics next week? We could have a chat about it too. > > Best Wishes, > Joachim > > -- > B.1079 Michael Smith Building > Faculty of Life Sciences > The University of Manchester > Oxford Road > Manchester > M13 9PT > United Kingdom > This email may have a PROTECTIVE MARKING, for an explanation please see: http://www.mrc.ac.uk/About/Informationandstandards/Documentmarking/index.htm
