I am experiencing the same problem with a brandnew brother DS-740D scanner,
when connecting the scanner to a USB3.0 port on a MSI GE63 7RD laptop
with Ubuntu 18.04 LTS, mouse and keyboard connected to USB are dead afterwards.
touchpad and keyboard directly on the machine are still working.

On Win10 the scanner works.

journalctl | grep -7 "controller not responding"
Feb 07 14:02:26 machine5 kernel: xhci_hcd 0000:00:14.0: Abort failed to stop 
command ring: -110
Feb 07 14:02:26 machine5 kernel: xhci_hcd 0000:00:14.0: xHCI host controller 
not responding, assume dead
Feb 07 14:02:26 machine5 kernel: xhci_hcd 0000:00:14.0: HC died; cleaning up
Feb 07 14:02:26 machine5 kernel: xhci_hcd 0000:00:14.0: Timeout while waiting 
for setup device command
Feb 07 14:02:26 machine5 kernel: usb 1-3: USB disconnect, device number 2
Feb 07 14:02:26 machine5 kernel: usb 1-3.1: USB disconnect, device number 4
Feb 07 14:02:26 machine5 kernel: usb 1-3.1.3: USB disconnect, device number 7
Feb 07 14:02:26 machine5 kernel: usb 1-3.1.3.1: USB disconnect, device number 10

No "VIA Labs, Inc" USB host devices.

Linux machine5 4.15.0-167-generic #175-Ubuntu SMP Wed Jan 5 01:56:07 UTC
2022 x86_64 x86_64 x86_64 GNU/Linux

So having a brandnew scanner and not getting it to work because of Ubuntu is 
quite a new experience.
:-/

-- 
You received this bug notification because you are a member of Kernel
Packages, which is subscribed to linux in Ubuntu.
https://bugs.launchpad.net/bugs/1956849

Title:
  Almost all USB ports suddenly stopped working; unbootable

Status in linux package in Ubuntu:
  Incomplete

Bug description:
  This package needs to be pulled NOW.  It disables almost all USB-3.0
  and USB-C ports completely.

  Even though I had automatic software updates turned OFF (or so I
  thought), my Mac Pro suddenly got a new kernel when I rebooted it this
  morning:

  Linux macpro-obs 5.11.0-44-generic #48~20.04.2-Ubuntu SMP Tue Dec 14
  15:36:44 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux

  and it contains a P0 showstopper bug.  Upon rebooting, I got dropped
  into the initrd prompt because Linux could not see the external USB
  drive that I'm booting from (WDBAGF5000AGY-WESN).

  I wasted an entire day figuring out what was wrong, and even went so
  far as to order a replacement SSD, planning to rebuild everything from
  scratch, because the drive failed to appear in every single USB port I
  tried.

  Then I discovered that a different SSD didn't work, either.  At that
  point, I realized that something else was wrong, and I kept trying
  until I found one other port that worked.  I was then able to boot and
  get dmesg and lsusb output.

  This kernel update broke not only the built-in ports, but also the
  ports on a generic USB-C PCIe card (Amazon B08PF8XR73).

  Mac Pro built-in USB-3.0(A) ports (2x): working
  Mac Pro built-in USB-C ports (4x): dead
  USB-C PCIe card USB-C ports (2x): dead
  USB-C PCIe card USB-3.0(A) ports (5x): dead

  All devices fail to appear in lsusb when attached to the port,
  including an Apple USB keyboard, an Anker USB-C Ethernet adapter, a WD
  SSD, and a Sandisk SSD.

  I'm going to roll back my kernel to a working kernel, but this package
  needs to be pulled NOW before it affects too many people.  This is too
  catastrophic a bug to wait even a day.

To manage notifications about this bug go to:
https://bugs.launchpad.net/ubuntu/+source/linux/+bug/1956849/+subscriptions


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