Re-installing from scratch should resolve the issue. I suspect in most cases if you install with the 21.10 installer (even though it has the old kernel) as long as you install updates during the install this issue probably won't hit you. It mostly seems to occur after a reboot and it's loading data back from disk again.
As per some of the other comments you'll have a bit of a hard time copying data off the old broken install.. you need to work through which files/folders are corrupt and reboot and then exclude those from the next rsync. You could use the 22.04 daily build, it will eventually upgrade into the final release. However not usually recommended as there may be bugs or other problems in those daily images and/or it's not uncommon for the development release to sometimes break during the development cycle. Most of the time it doesn't and it usually works most of the time, but it's much more likely than using 21.10. I'd try a re-install with 21.10 as I described. Obviously you'll need to backup all of your data from the existing install first. -- You received this bug notification because you are a member of Kernel Packages, which is subscribed to zfs-linux in Ubuntu. https://bugs.launchpad.net/bugs/1906476 Title: PANIC at zfs_znode.c:335:zfs_znode_sa_init() // VERIFY(0 == sa_handle_get_from_db(zfsvfs->z_os, db, zp, SA_HDL_SHARED, &zp->z_sa_hdl)) failed Status in Native ZFS for Linux: New Status in linux package in Ubuntu: Invalid Status in linux-raspi package in Ubuntu: Confirmed Status in ubuntu-release-upgrader package in Ubuntu: Confirmed Status in zfs-linux package in Ubuntu: Fix Released Status in linux source package in Impish: Fix Released Status in linux-raspi source package in Impish: Fix Released Status in ubuntu-release-upgrader source package in Impish: Confirmed Status in zfs-linux source package in Impish: Fix Released Bug description: Since today while running Ubuntu 21.04 Hirsute I started getting a ZFS panic in the kernel log which was also hanging Disk I/O for all Chrome/Electron Apps. I have narrowed down a few important notes: - It does not happen with module version 0.8.4-1ubuntu11 built and included with 5.8.0-29-generic - It was happening when using zfs-dkms 0.8.4-1ubuntu16 built with DKMS on the same kernel and also on 5.8.18-acso (a custom kernel). - For whatever reason multiple Chrome/Electron apps were affected, specifically Discord, Chrome and Mattermost. In all cases they seem (but I was unable to strace the processes so it was a bit hard ot confirm 100% but by deduction from /proc/PID/fd and the hanging ls) they seem hung trying to open files in their 'Cache' directory, e.g. ~/.cache/google-chrome/Default/Cache and ~/.config/Mattermost/Cache .. while the issue was going on I could not list that directory either "ls" would just hang. - Once I removed zfs-dkms only to revert to the kernel built-in version it immediately worked without changing anything, removing files, etc. - It happened over multiple reboots and kernels every time, all my Chrome apps weren't working but for whatever reason nothing else seemed affected. - It would log a series of spl_panic dumps into kern.log that look like this: Dec 2 12:36:42 optane kernel: [ 72.857033] VERIFY(0 == sa_handle_get_from_db(zfsvfs->z_os, db, zp, SA_HDL_SHARED, &zp->z_sa_hdl)) failed Dec 2 12:36:42 optane kernel: [ 72.857036] PANIC at zfs_znode.c:335:zfs_znode_sa_init() I could only find one other google reference to this issue, with 2 other users reporting the same error but on 20.04 here: https://github.com/openzfs/zfs/issues/10971 - I was not experiencing the issue on 0.8.4-1ubuntu14 and fairly sure it was working on 0.8.4-1ubuntu15 but broken after upgrade to 0.8.4-1ubuntu16. I will reinstall those zfs-dkms versions to verify that. There were a few originating call stacks but the first one I hit was Call Trace: dump_stack+0x74/0x95 spl_dumpstack+0x29/0x2b [spl] spl_panic+0xd4/0xfc [spl] ? sa_cache_constructor+0x27/0x50 [zfs] ? _cond_resched+0x19/0x40 ? mutex_lock+0x12/0x40 ? dmu_buf_set_user_ie+0x54/0x80 [zfs] zfs_znode_sa_init+0xe0/0xf0 [zfs] zfs_znode_alloc+0x101/0x700 [zfs] ? arc_buf_fill+0x270/0xd30 [zfs] ? __cv_init+0x42/0x60 [spl] ? dnode_cons+0x28f/0x2a0 [zfs] ? _cond_resched+0x19/0x40 ? _cond_resched+0x19/0x40 ? mutex_lock+0x12/0x40 ? aggsum_add+0x153/0x170 [zfs] ? spl_kmem_alloc_impl+0xd8/0x110 [spl] ? arc_space_consume+0x54/0xe0 [zfs] ? dbuf_read+0x4a0/0xb50 [zfs] ? _cond_resched+0x19/0x40 ? mutex_lock+0x12/0x40 ? dnode_rele_and_unlock+0x5a/0xc0 [zfs] ? _cond_resched+0x19/0x40 ? mutex_lock+0x12/0x40 ? dmu_object_info_from_dnode+0x84/0xb0 [zfs] zfs_zget+0x1c3/0x270 [zfs] ? dmu_buf_rele+0x3a/0x40 [zfs] zfs_dirent_lock+0x349/0x680 [zfs] zfs_dirlook+0x90/0x2a0 [zfs] ? zfs_zaccess+0x10c/0x480 [zfs] zfs_lookup+0x202/0x3b0 [zfs] zpl_lookup+0xca/0x1e0 [zfs] path_openat+0x6a2/0xfe0 do_filp_open+0x9b/0x110 ? __check_object_size+0xdb/0x1b0 ? __alloc_fd+0x46/0x170 do_sys_openat2+0x217/0x2d0 ? do_sys_openat2+0x217/0x2d0 do_sys_open+0x59/0x80 __x64_sys_openat+0x20/0x30 To manage notifications about this bug go to: https://bugs.launchpad.net/zfs/+bug/1906476/+subscriptions -- Mailing list: https://launchpad.net/~kernel-packages Post to : kernel-packages@lists.launchpad.net Unsubscribe : https://launchpad.net/~kernel-packages More help : https://help.launchpad.net/ListHelp
