They should work, at least at initramfs stage. You can use the keyboard
to decrypt rootfs proves that.

I am not sure why they stopped working in rootfs though.

Does your lsusb in #11 captured when the keyboards didn't work?

[    2.862043] input: Microsoft Natural® Ergonomic Keyboard 4000 as 
/devices/pci0000:00/0000:00:14.0/usb3/3-1/3-1.1/3-1.1:1.0/0003:045E:00DB.0004/input/input8
[    2.862074] logitech-djreceiver 0003:046D:C52B.0003: hiddev0,hidraw0: USB 
HID v1.11 Device [Logitech USB Receiver] on usb-0000:00:14.0-3/input2
[    2.908170] clocksource: Switched to clocksource tsc
[    2.920192] microsoft 0003:045E:00DB.0004: input,hidraw1: USB HID v1.11 
Keyboard [Microsoft Natural® Ergonomic Keyboard 4000] on 
usb-0000:00:14.0-1.1/input0
[    2.920395] input: Microsoft Natural® Ergonomic Keyboard 4000 as 
/devices/pci0000:00/0000:00:14.0/usb3/3-1/3-1.1/3-1.1:1.1/0003:045E:00DB.0005/input/input9
[    2.980170] microsoft 0003:045E:00DB.0005: input,hidraw2: USB HID v1.11 
Device [Microsoft Natural® Ergonomic Keyboard 4000] on 
usb-0000:00:14.0-1.1/input1
[    2.996137] input: Logitech K360 as 
/devices/pci0000:00/0000:00:14.0/usb3/3-3/3-3:1.2/0003:046D:C52B.0003/0003:046D:4004.0006/input/input10
[    2.996278] logitech-hidpp-device 0003:046D:4004.0006: input,hidraw3: USB 
HID v1.11 Keyboard [Logitech K360] on usb-0000:00:14.0-3:1
[    2.998053] input: Logitech M570 as 
/devices/pci0000:00/0000:00:14.0/usb3/3-3/3-3:1.2/0003:046D:C52B.0003/0003:046D:1028.0007/input/input11
[    2.998289] logitech-hidpp-device 0003:046D:1028.0007: input,hidraw4: USB 
HID v1.11 Mouse [Logitech M570] on usb-0000:00:14.0-3:2

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https://bugs.launchpad.net/bugs/1723994

Title:
  Keyboard plugged in to monitor USB hub does not work at password
  prompt

Status in linux package in Ubuntu:
  Confirmed

Bug description:
  I have my external keyboard plugged in to my monitor's USB hub.
  Unless I unplug and replug the USB cable that connects the monitor hub
  to my machine, I can't use my keyboard on boot.

  ProblemType: Bug
  DistroRelease: Ubuntu 17.10
  Package: cryptsetup 2:1.7.3-4ubuntu1
  ProcVersionSignature: Ubuntu 4.13.0-16.19-generic 4.13.4
  Uname: Linux 4.13.0-16-generic x86_64
  ApportVersion: 2.20.7-0ubuntu3
  Architecture: amd64
  Date: Mon Oct 16 11:45:42 2017
  EcryptfsInUse: Yes
  InstallationDate: Installed on 2014-09-04 (1138 days ago)
  InstallationMedia: Ubuntu 14.04.1 LTS "Trusty Tahr" - Release amd64 
(20140722.2)
  SourcePackage: cryptsetup
  UpgradeStatus: Upgraded to artful on 2016-12-05 (315 days ago)
  cmdline: BOOT_IMAGE=/vmlinuz-4.13.0-16-generic.efi.signed 
root=/dev/mapper/ubuntu--vg-root ro quiet splash nomdmonddf nomdmonisw 
vt.handoff=7
  crypttab:
   sda3_crypt UUID=dc873bc3-22f0-491d-9f5b-50d322f31987 none luks,discard
   #cryptswap1 UUID=f44f685a-f520-4e81-b35a-0b9cba44a8a9 /dev/urandom 
swap,cipher=aes-cbc-essiv:sha256
  --- 
  ApportVersion: 2.20.7-0ubuntu3
  Architecture: amd64
  AudioDevicesInUse:
   USER        PID ACCESS COMMAND
   /dev/snd/controlC1:  daniel     9156 F.... pulseaudio
   /dev/snd/controlC0:  daniel     9010 F.... volumeicon
                        daniel     9156 F.... pulseaudio
  DistroRelease: Ubuntu 17.10
  EcryptfsInUse: Yes
  InstallationDate: Installed on 2014-09-04 (1145 days ago)
  InstallationMedia: Ubuntu 14.04.1 LTS "Trusty Tahr" - Release amd64 
(20140722.2)
  MachineType: LENOVO 20ANCTO1WW
  Package: linux (not installed)
  ProcFB: 0 inteldrmfb
  ProcKernelCmdLine: BOOT_IMAGE=/vmlinuz-4.13.0-16-generic.efi.signed 
root=/dev/mapper/ubuntu--vg-root ro quiet splash nomdmonddf nomdmonisw 
vt.handoff=7
  ProcVersionSignature: Ubuntu 4.13.0-16.19-generic 4.13.4
  RelatedPackageVersions:
   linux-restricted-modules-4.13.0-16-generic N/A
   linux-backports-modules-4.13.0-16-generic  N/A
   linux-firmware                             1.169
  Tags:  artful
  Uname: Linux 4.13.0-16-generic x86_64
  UpgradeStatus: Upgraded to artful on 2016-12-05 (321 days ago)
  UserGroups: adm audio cdrom dip disk docker fuse libvirt libvirtd lpadmin lxd 
plugdev sambashare sbuild sudo
  _MarkForUpload: True
  dmi.bios.date: 05/21/2014
  dmi.bios.vendor: LENOVO
  dmi.bios.version: GLET70WW (2.24 )
  dmi.board.asset.tag: Not Available
  dmi.board.name: 20ANCTO1WW
  dmi.board.vendor: LENOVO
  dmi.board.version: SDK0E50512 STD
  dmi.chassis.asset.tag: No Asset Information
  dmi.chassis.type: 10
  dmi.chassis.vendor: LENOVO
  dmi.chassis.version: Not Available
  dmi.modalias: 
dmi:bvnLENOVO:bvrGLET70WW(2.24):bd05/21/2014:svnLENOVO:pn20ANCTO1WW:pvrThinkPadT440p:rvnLENOVO:rn20ANCTO1WW:rvrSDK0E50512STD:cvnLENOVO:ct10:cvrNotAvailable:
  dmi.product.family: ThinkPad T440p
  dmi.product.name: 20ANCTO1WW
  dmi.product.version: ThinkPad T440p
  dmi.sys.vendor: LENOVO

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