I did some more testing with upstream kernel. The upstream kernel
similarly has the occasional freeze where the entire desktop stops
responding or updating (while the hardware mouse cursor is usually still
movable but clicking doesn't do anything), however unlike the Ubuntu
17.04 kernel it always recovers immediately after 1-3 seconds and
responds again. Ubuntu's kernel just gets stuck for me forever - one
time I waited over a minute to see if something would wake up again, but
the image just remained frozen forever and that's it.

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https://bugs.launchpad.net/bugs/1682402

Title:
  Running I/O heavy operation (cp) inside terminal in X server session
  will lock up entire system while running it in a TTY works fine

Status in linux package in Ubuntu:
  Confirmed

Bug description:
  Running I/O heavy operation (cp) inside terminal in X server session
  will lock up entire system while running it in a TTY works fine.

  I am filing this as a kernel bug because the following steps will
  still hang the system:

  1. Open up gnome-terminal
  2. Start copying a really large file between two different EXT4 partitions on 
my local SSD with a "cp" command
  3. Switch to a TTY
  4. Login to TTY and observe htop or iotop

  Expected result: I can see the operation happen and after a while it
  completes

  Actual result: Keyboard drops out some time during operation (TTY
  stops responding, caps lock light no longer responds to pressing caps
  lock, computer appears effectively dead with last screen image frozen)

  
  When I run the "cp" operation on the TTY to start with, no matter if the X 
session is running in parallel or not, it works as expected with no trouble.

  ProblemType: Bug
  DistroRelease: Ubuntu 17.04
  Package: linux-generic 4.10.0.19.21
  ProcVersionSignature: Ubuntu 4.10.0-19.21-generic 4.10.8
  Uname: Linux 4.10.0-19-generic x86_64
  ApportVersion: 2.20.4-0ubuntu4
  Architecture: amd64
  AudioDevicesInUse:
   USER        PID ACCESS COMMAND
   /dev/snd/pcmC0D0p:   jonas      2297 F...m pulseaudio
   /dev/snd/controlC0:  jonas      2297 F.... pulseaudio
  CurrentDesktop: GNOME
  Date: Thu Apr 13 13:04:03 2017
  InstallationDate: Installed on 2017-04-08 (4 days ago)
  InstallationMedia: Ubuntu 16.10 "Yakkety Yak" - Release amd64 (20161012.2)
  Lsusb:
   Bus 002 Device 001: ID 1d6b:0003 Linux Foundation 3.0 root hub
   Bus 001 Device 004: ID 138a:0090 Validity Sensors, Inc. 
   Bus 001 Device 003: ID 13d3:5248 IMC Networks 
   Bus 001 Device 005: ID 056a:5047 Wacom Co., Ltd 
   Bus 001 Device 001: ID 1d6b:0002 Linux Foundation 2.0 root hub
  MachineType: LENOVO 20FDCTO1WW
  ProcFB: 0 inteldrmfb
  ProcKernelCmdLine: BOOT_IMAGE=/vmlinuz-4.10.0-19-generic.efi.signed 
root=/dev/mapper/fedora-root ro rootdelay=5 quiet splash vt.handoff=7
  RelatedPackageVersions:
   linux-restricted-modules-4.10.0-19-generic N/A
   linux-backports-modules-4.10.0-19-generic  N/A
   linux-firmware                             1.164
  SourcePackage: linux
  UpgradeStatus: Upgraded to zesty on 2017-04-12 (1 days ago)
  dmi.bios.date: 11/16/2015
  dmi.bios.vendor: LENOVO
  dmi.bios.version: N1GET35W (1.12 )
  dmi.board.asset.tag: Not Available
  dmi.board.name: 20FDCTO1WW
  dmi.board.vendor: LENOVO
  dmi.board.version: SDK0J40700 WIN
  dmi.chassis.asset.tag: No Asset Information
  dmi.chassis.type: 10
  dmi.chassis.vendor: LENOVO
  dmi.chassis.version: None
  dmi.modalias: 
dmi:bvnLENOVO:bvrN1GET35W(1.12):bd11/16/2015:svnLENOVO:pn20FDCTO1WW:pvrThinkPadYoga260:rvnLENOVO:rn20FDCTO1WW:rvrSDK0J40700WIN:cvnLENOVO:ct10:cvrNone:
  dmi.product.name: 20FDCTO1WW
  dmi.product.version: ThinkPad Yoga 260
  dmi.sys.vendor: LENOVO

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