I tested with the updated kernel and unfortunately, it does not resolve
the issue.  Since these are recently uncovered issues upstream, could
you cherry pick those against the Zesty kernel?  Once we know it's
resolved in the latest kernel we can track down what changes needed for
Xenial.

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https://bugs.launchpad.net/bugs/1682456

Title:
  md devices may leave remnants in /sys/class/block after removal

Status in linux package in Ubuntu:
  Confirmed

Bug description:
  1. root@x1:~# cat /proc/version_signature
  Ubuntu 4.4.0-72.93-generic 4.4.49

  2. attached

  3. # lsb_release -rd
  Description:  Ubuntu 16.04.2 LTS
  Release:      16.04

  4. # apt-cache policy linux-image-`uname -r`
  linux-image-4.4.0-72-generic:
    Installed: 4.4.0-72.93
    Candidate: 4.4.0-72.93
    Version table:
   *** 4.4.0-72.93 500
          500 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 
Packages
          500 http://security.ubuntu.com/ubuntu xenial-security/main amd64 
Packages
          100 /var/lib/dpkg/status

  5. After stopping an md device, the sysfs and /dev entry should be
  removed:

  mdadm --stop /dev/md0  && [ "`test -e /sys/class/block/md0`" = "1" ]; echo $rc
  should return 0;

  6. /dev/md0 is gone, but /sys/class/block/md0 remains

  I believe this is related to this thread here:

  https://www.spinics.net/lists/raid/msg54859.html

  ProblemType: Bug
  DistroRelease: Ubuntu 16.04
  Package: linux-image-4.4.0-72-generic 4.4.0-72.93
  ProcVersionSignature: Ubuntu 4.4.0-72.93-generic 4.4.49
  Uname: Linux 4.4.0-72-generic x86_64
  AlsaDevices:
   total 0
   crw-rw---- 1 root audio 116,  1 Apr 12 21:55 seq
   crw-rw---- 1 root audio 116, 33 Apr 12 21:55 timer
  AplayDevices: Error: [Errno 2] No such file or directory: 'aplay'
  ApportVersion: 2.20.1-0ubuntu2.5
  Architecture: amd64
  ArecordDevices: Error: [Errno 2] No such file or directory: 'arecord'
  AudioDevicesInUse: Error: command ['fuser', '-v', '/dev/snd/seq', 
'/dev/snd/timer'] failed with exit code 1:
  CRDA: N/A
  Date: Thu Apr 13 14:32:17 2017
  IwConfig: Error: [Errno 2] No such file or directory: 'iwconfig'
  Lsusb: Bus 001 Device 001: ID 1d6b:0001 Linux Foundation 1.1 root hub
  MachineType: QEMU Standard PC (i440FX + PIIX, 1996)
  PciMultimedia:
   
  ProcEnviron:
   TERM=xterm
   PATH=(custom, no user)
   LANG=en_US.UTF-8
   SHELL=/bin/bash
  ProcFB:
   
  ProcKernelCmdLine: BOOT_IMAGE=/boot/vmlinuz-4.4.0-72-generic 
root=UUID=4c974bc3-8fe8-41b5-a563-23b2dcf974c9 ro console=tty1 console=ttyS0
  RelatedPackageVersions:
   linux-restricted-modules-4.4.0-72-generic N/A
   linux-backports-modules-4.4.0-72-generic  N/A
   linux-firmware                            N/A
  RfKill: Error: [Errno 2] No such file or directory: 'rfkill'
  SourcePackage: linux
  UpgradeStatus: No upgrade log present (probably fresh install)
  dmi.bios.date: 04/01/2014
  dmi.bios.vendor: SeaBIOS
  dmi.bios.version: Ubuntu-1.8.2-1ubuntu2
  dmi.chassis.type: 1
  dmi.chassis.vendor: QEMU
  dmi.chassis.version: pc-i440fx-yakkety
  dmi.modalias: 
dmi:bvnSeaBIOS:bvrUbuntu-1.8.2-1ubuntu2:bd04/01/2014:svnQEMU:pnStandardPC(i440FX+PIIX,1996):pvrpc-i440fx-yakkety:cvnQEMU:ct1:cvrpc-i440fx-yakkety:
  dmi.product.name: Standard PC (i440FX + PIIX, 1996)
  dmi.product.version: pc-i440fx-yakkety
  dmi.sys.vendor: QEMU

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