Same problem here. Using triple screen (laptop + 2 external monitors) on
a Lenovo ThinkPad t460s.

Monitor on display port is turning black for 2-5 seconds on cursor
movement or focus changes with alt+tab.

OS: Ubuntu 16.10 amd64
Kernel: 4.8.0-26
CPU: Intel Core i7-6600U 
GPU: Intel HD Graphics 520 (Skylake GT2) 

Totally related to the fact that Intel didn't make available the latest drivers 
for yakkety. You can't even get them with the updater because it's not 
mentioned in here:
https://download.01.org/gfx/ilg-config.cfg

There is simply no 16.10 repo:
https://download.01.org/gfx/repos/ubuntu/

Two possible fix I found for now:

- Use the kernel 4.6.7: http://kernel.ubuntu.com/~kernel-ppa/mainline/v4.6.7/
- Use the drm-intel-nightly kernel 4.9.0-994: 
http://kernel.ubuntu.com/~kernel-ppa/mainline/drm-intel-nightly/
==> there is no amd64 successful build available anymore, last was 201610192310

Drawback: I don't have the linux-image-extra for those kernels so I
don't have aufs for docker.

I had no issues whatsoever on Ubuntu 16.04 LTS with kernel 4.4.x

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You received this bug notification because you are a member of Kernel
Packages, which is subscribed to linux in Ubuntu.
https://bugs.launchpad.net/bugs/1634449

Title:
  Black flicker when leaving monitor

Status in linux package in Ubuntu:
  Triaged

Bug description:
  Sometimes, when moving cursor from one monitor to the other, the
  external monitor turns black and gets back on again.

  The hardware is Dell Latitude E5470 with Docking Station and monitor
  connected via DisplayPort (checked both ports and happens on both of
  them).

  Everything worked correctly on Ubuntu 16.04, but it happens on Ubuntu
  16.10. Kernel 4.8.0-25-generic.

  The bug isn't related to cursor only, if focus changes by alt+tab it
  sometimes happens as well.

  
  https://bugs.launchpad.net/ubuntu/+source/linux/+bug/1553503 This is the same 
bug as this one, but closed.
  --- 
  ApportVersion: 2.20.3-0ubuntu8
  Architecture: amd64
  AudioDevicesInUse:
   USER        PID ACCESS COMMAND
   /dev/snd/pcmC0D0p:   vessel     5602 F...m pulseaudio
   /dev/snd/controlC0:  vessel     5602 F.... pulseaudio
  CurrentDesktop: Unity
  DistroRelease: Ubuntu 16.10
  HibernationDevice: RESUME=UUID=56fab9c8-7226-47b9-91cb-a2c865f81bc0
  InstallationDate: Installed on 2016-08-31 (47 days ago)
  InstallationMedia: Ubuntu 16.04.1 LTS "Xenial Xerus" - Release amd64 
(20160719)
  MachineType: Dell Inc. Latitude E5470
  Package: linux (not installed)
  ProcFB: 0 inteldrmfb
  ProcKernelCmdLine: BOOT_IMAGE=/vmlinuz-4.8.0-25-generic.efi.signed 
root=/dev/mapper/ubuntu--vg-root ro quiet splash vt.handoff=7
  ProcVersionSignature: Ubuntu 4.8.0-25.27-generic 4.8.1
  RelatedPackageVersions:
   linux-restricted-modules-4.8.0-25-generic N/A
   linux-backports-modules-4.8.0-25-generic  N/A
   linux-firmware                            1.161
  Tags:  yakkety
  Uname: Linux 4.8.0-25-generic x86_64
  UpgradeStatus: Upgraded to yakkety on 2016-10-14 (3 days ago)
  UserGroups: adm cdrom dip docker lpadmin plugdev sambashare sudo
  _MarkForUpload: True
  dmi.bios.date: 06/15/2016
  dmi.bios.vendor: Dell Inc.
  dmi.bios.version: 1.7.3
  dmi.board.name: 0P88J9
  dmi.board.vendor: Dell Inc.
  dmi.board.version: A00
  dmi.chassis.type: 9
  dmi.chassis.vendor: Dell Inc.
  dmi.modalias: 
dmi:bvnDellInc.:bvr1.7.3:bd06/15/2016:svnDellInc.:pnLatitudeE5470:pvr:rvnDellInc.:rn0P88J9:rvrA00:cvnDellInc.:ct9:cvr:
  dmi.product.name: Latitude E5470
  dmi.sys.vendor: Dell Inc.

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