Hello All,
I am relatively new to working with HCP tfMRI connectome data and am running
into a bit of confusion about the following: I have statistical map outputs (in
stats.nii.gz format) from, CIFTI data converted to NIFTI data that I put into
AFNI 3dDeconvolve. I am interested in converting this output (stats.nii.gz)
back into CIFTI in order to regain respect to the surface and structure
information (that does not appear to remain when you wb_command CIFTI->NIFTI).
It appears this will do the trick?:
[-from-nifti] - convert a NIFTI (1 or 2) file made with this command back
into CIFTI
<nifti-in> - the input nifti file
<cifti-template> - a cifti file with the dimension(s) and mapping(s)
that should be used
<cifti-out> - output - the output cifti file
If so, what exactly does it mean by "cifti-template?" Would this be the
original dtseries file I used to procure the AFNI 3dDeconvolve outputs or is
there a generic template brain(s) for the various CIFTI data types?
Best,
Marco A. Pipoly, B.S.
NSF Graduate Research Fellow
Graduate Student, PhD in Neuroscience
University of Iowa
[email protected]
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