Ni! Your check says you've got numpy installed for python3.6 ... and yet your configure output tells us you're compiling for python-2.7.
Which version of graph-tool are you even compiling ? Recent versions require python 3. Old versions are not supported and not recommended. Also, make sure you have a very good reason to be compiling it instead of using one of the many prepackaged options <https://git.skewed.de/count0/graph-tool/-/wikis/installation-instructions>. Cheers, .~ยด On Wed, Apr 7, 2021 at 12:25 PM Kasper <[email protected]> wrote: > when I run ./configure this is the output I get: > > checking build system type... x86_64-pc-linux-gnu > checking host system type... x86_64-pc-linux-gnu > checking target system type... x86_64-pc-linux-gnu > checking for a BSD-compatible install... /usr/bin/install -c > checking whether build environment is sane... yes > checking for a race-free mkdir -p... /bin/mkdir -p > checking for gawk... gawk > checking whether make sets $(MAKE)... yes > checking whether make supports nested variables... yes > checking how to create a pax tar archive... gnutar > checking whether make supports nested variables... (cached) yes > checking whether make supports the include directive... yes (GNU style) > checking for gcc... gcc > checking whether the C compiler works... yes > checking for C compiler default output file name... a.out > checking for suffix of executables... > checking whether we are cross compiling... no > checking for suffix of object files... o > checking whether the compiler supports GNU C... yes > checking whether gcc accepts -g... yes > checking for gcc option to enable C11 features... none needed > checking whether gcc understands -c and -o together... yes > checking dependency style of gcc... gcc3 > checking for library containing strerror... none required > checking for stdio.h... yes > checking for stdlib.h... yes > checking for string.h... yes > checking for inttypes.h... yes > checking for stdint.h... yes > checking for strings.h... yes > checking for sys/stat.h... yes > checking for sys/types.h... yes > checking for unistd.h... yes > checking for wchar.h... yes > checking for minix/config.h... no > checking whether it is safe to define __EXTENSIONS__... yes > checking whether _XOPEN_SOURCE should be defined... no > checking for g++... g++ > checking whether the compiler supports GNU C++... yes > checking whether g++ accepts -g... yes > checking for g++ option to enable C++11 features... none needed > checking dependency style of g++... gcc3 > checking for grep that handles long lines and -e... /bin/grep > checking for egrep... /bin/grep -E > checking how to print strings... printf > checking for a sed that does not truncate output... /bin/sed > checking for fgrep... /bin/grep -F > checking for ld used by gcc... /usr/bin/ld > checking if the linker (/usr/bin/ld) is GNU ld... yes > checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B > checking the name lister (/usr/bin/nm -B) interface... BSD nm > checking whether ln -s works... yes > checking the maximum length of command line arguments... 1572864 > checking how to convert x86_64-pc-linux-gnu file names to > x86_64-pc-linux-gnu format... func_convert_file_noop > checking how to convert x86_64-pc-linux-gnu file names to toolchain > format... func_convert_file_noop > checking for /usr/bin/ld option to reload object files... -r > checking for objdump... objdump > checking how to recognize dependent libraries... pass_all > checking for dlltool... no > checking how to associate runtime and link libraries... printf %s\n > checking for ar... ar > checking for archiver @FILE support... @ > checking for strip... strip > checking for ranlib... ranlib > checking command to parse /usr/bin/nm -B output from gcc object... ok > checking for sysroot... no > checking for a working dd... /bin/dd > checking how to truncate binary pipes... /bin/dd bs=4096 count=1 > checking for mt... mt > checking if mt is a manifest tool... no > checking for dlfcn.h... yes > checking for objdir... .libs > checking if gcc supports -fno-rtti -fno-exceptions... no > checking for gcc option to produce PIC... -fPIC -DPIC > checking if gcc PIC flag -fPIC -DPIC works... yes > checking if gcc static flag -static works... yes > checking if gcc supports -c -o file.o... yes > checking if gcc supports -c -o file.o... (cached) yes > checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared > libraries... yes > checking whether -lc should be explicitly linked in... no > checking dynamic linker characteristics... GNU/Linux ld.so > checking how to hardcode library paths into programs... immediate > checking whether stripping libraries is possible... yes > checking if libtool supports shared libraries... yes > checking whether to build shared libraries... yes > checking whether to build static libraries... no > checking how to run the C++ preprocessor... g++ -E > checking for ld used by g++... /usr/bin/ld -m elf_x86_64 > checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes > checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared > libraries... yes > checking for g++ option to produce PIC... -fPIC -DPIC > checking if g++ PIC flag -fPIC -DPIC works... yes > checking if g++ static flag -static works... yes > checking if g++ supports -c -o file.o... yes > checking if g++ supports -c -o file.o... (cached) yes > checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared > libraries... yes > checking dynamic linker characteristics... (cached) GNU/Linux ld.so > checking how to hardcode library paths into programs... immediate > checking for pkg-config... /usr/bin/pkg-config > checking pkg-config is at least version 0.9.0... yes > checking whether g++ supports C++17 features by default... no > checking whether g++ supports C++17 features with -std=gnu++17... yes > configure: WARNING: C++17 is not yet standardized, so the checks may change > in incompatible ways anytime > checking whether to enable debug info... no > checking whether to enable parallel algorithms with openmp... checking for > OpenMP flag of C++ compiler... -fopenmp > checking whether to enable cairo drawing... yes > checking for EXPAT... yes > checking for a Python interpreter with version >= 2.7... python > checking for python... /usr/bin/python > checking for python version... 2.7 > checking for python platform... linux2 > checking for python script directory... > ${prefix}/lib/python2.7/dist-packages > checking for python extension module directory... > ${exec_prefix}/lib/python2.7/dist-packages > checking for python2.7... (cached) /usr/bin/python > checking for a version of Python >= '2.1.0'... yes > checking for a version of Python == '2.7.17'... yes > checking for the distutils Python package... yes > checking for Python include path... -I/usr/include/python2.7 > checking for Python library path... -L/usr/lib -lpython2.7 > checking for Python site-packages path... /usr/lib/python2.7/dist-packages > checking python extra libraries... -lpthread -ldl -lutil -lm > checking python extra linking flags... -Xlinker -export-dynamic -Wl,-O1 > -Wl,-Bsymbolic-functions > checking consistency of all components of python development environment... > yes > checking for boostlib >= 1.55.0 (105500)... yes > checking whether the Boost::Python library is available... yes > checking whether boost_python27 is the correct library... no > checking whether boost_python-py27 is the correct library... yes > checking whether the Boost::IOStreams library is available... yes > checking for exit in -lboost_iostreams... yes > checking whether the Boost::Regex library is available... yes > checking for exit in -lboost_regex... yes > checking whether the Boost::Context library is available... yes > checking for exit in -lboost_context... yes > checking whether the Boost::Coroutine library is available... yes > checking for exit in -lboost_coroutine... yes > checking whether the Boost::Graph library is available... yes > checking for exit in -lboost_graph... yes > checking whether the Boost::Thread library is available... yes > checking for exit in -lboost_thread... yes > checking for __gmpz_init in -lgmp... yes > checking for __gmpz_init in -lgmp... (cached) yes > checking whether CGAL is available in /usr... yes > checking whether to enable debbuging with valgrind... no > checking python module: numpy... no > configure: error: failed to find required module numpy > > I have numpy istalled in the right place (Ibelieve) > To check this I've run : pip install numpy > and got: > numpy in /home/kaspersegers/.local/lib/python3.6/site-packages (1.17.3) > > What can I do to remedy this? > > > > -- > Sent from: https://nabble.skewed.de/ > _______________________________________________ > graph-tool mailing list > [email protected] > https://lists.skewed.de/mailman/listinfo/graph-tool >
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