Hi again,

I'll try to rephrase the problem. When uploading a NetCDF file I get the "Could 
not list layers for this store" problem. The file follows the CF 1.6 convention 
and can be read by qgis and other NetCDF-readers. I uploaded the file here.

https://www.dropbox.com/s/ssanmgozpg16g5p/stockholm_110_historic_crun-monthly_mean.nc?dl=0

The geoserver log-file says:

Caused by: java.io.IOException: java.lang.IllegalArgumentException: Unable to 
find a CRS for the provided variable: lon

I added the WKT-string in a file under the user_projections catalogue. 
Geoserver can find my CRS but for the lon-variable he still insists on the 
projection.

Does anyone have any clue?

Here is the NetCDF-header:


netcdf stockholm_110_historic_crun-monthly_mean {
dimensions:
        x = 110 ;
        y = 110 ;
        time = UNLIMITED ; // (60 currently)
        bnds = 2 ;
variables:
        float lon(y, x) ;
                lon:standard_name = "longitude" ;
                lon:long_name = "longitude" ;
                lon:units = "degrees_east" ;
                lon:_CoordinateAxisType = "Lon" ;
                lon:grid_mapping = "projection" ;
        float lat(y, x) ;
                lat:standard_name = "latitude" ;
                lat:long_name = "latitude" ;
                lat:units = "degrees_north" ;
                lat:_CoordinateAxisType = "Lat" ;
                lat:grid_mapping = "projection" ;
        float x(x) ;
                x:standard_name = "projection_x_coordinate" ;
                x:long_name = "x coordinate of projection" ;
                x:units = "m" ;
                x:axis = "X" ;
        float y(y) ;
                y:standard_name = "projection_y_coordinate" ;
                y:long_name = "y coordinate of projection" ;
                y:units = "m" ;
                y:axis = "Y" ;
        int projection ;
                projection:false_easting = 150000. ;
                projection:false_northing = 0. ;
                projection:grid_mapping_name = "projection" ;
                projection:latitude_of_projection_origin = 0. ;
                projection:longitude_of_central_meridian = 18. ;
                projection:proj4 = "+proj=tmerc +lat_0=0 +lon_0=18 +k=1 
+x_0=150000 +y_0=0 +ellps=GRS80 +towgs84=0,0,0,0,0,0,0 +units=m +no_defs" ;
                projection:scale_factor_at_central_meridian = 1. ;
                projection:semi_major_axis = 6378137. ;
                projection:inverse_flattening = 298.257222101 ;
                projection:spatial_ref = "PROJCS[\"SWEREF99 18 
00\",GEOGCS[\"SWEREF99\",DATUM[\"SWEREF99\",SPHEROID[\"GRS 1980\", 6378137.0, 
298.257222101, AUTHORITY[\"EPSG\",\"7019\"]],TOWGS84[0.0, 0.0, 0.0, 0\
.0, 0.0, 0.0, 0.0],AUTHORITY[\"EPSG\",\"6619\"]],PRIMEM[\"Greenwich\", 0.0, 
AUTHORITY[\"EPSG\",\"8901\"]],UNIT[\"degree\", 
0.017453292519943295],AXIS[\"Geodetic latitude\", NORTH],AXIS[\"Geodetic 
longitude\", E\
AST],AUTHORITY[\"EPSG\",\"4619\"]],PROJECTION[\"Transverse_Mercator\", 
AUTHORITY[\"EPSG\",\"9807\"]],PARAMETER[\"central_meridian\", 
18.0],PARAMETER[\"latitude_of_origin\", 0.0],PARAMETER[\"scale_factor\", 1.0]\
,PARAMETER[\"false_easting\", 150000.0],PARAMETER[\"false_northing\", 
0.0],UNIT[\"m\", 1.0],AXIS[\"Northing\", NORTH],AXIS[\"Easting\", 
EAST],AUTHORITY[\"EPSG\",\"3011\"]]" ;
        float time(time) ;
                time:standard_name = "time" ;
                time:long_name = "time" ;
                time:bounds = "time_bnds" ;
   time:units = "hours since 2006-01-01 00:00" ;
                time:calendar = "standard" ;
                time:axis = "T" ;
        double time_bnds(time, bnds) ;
        float crun(time, y, x) ;
                crun:long_name = "runoff" ;
                crun:units = "mm h-1" ;
                crun:grid_mapping = "projection" ;
                crun:coordinates = "lat lon" ;
                crun:_FillValue = -1.e+20f ;
                crun:missing_value = -1.e+20f ;
                crun:ModelAttributes = "{\'Hydrological Model\': \'HYPE\'}" ;
                crun:DataAttributes = "{\"ECV\": \"monthly mean\", 
\"ECV_calculated_on\": \"2017-10-25\"}" ;

// global attributes:
                :history = "Wed Oct 25 16:19:58 2017: cdo monmean 
timeseries/stockholm_110_presclim_crun.nc 
ecvs/stockholm_110_presclim_crun-monthly_mean.nc\nThu Jun 29 12:33:05 2017: 
ncks -4 /data/proj/UrbanSI\
S/workspace/JR/hype2grid/Stockholm/Harmonie/timeCRUN.nc 
/data/proj/UrbanSIS/workspace/JR/hype2grid/Stockholm/Harmonie/publish/timeCRUN.nc\nThu
 Jun 29 12:32:44 2017: ncrcat /data/proj/UrbanSIS/workspace/JR/hype2\
grid/Stockholm/Harmonie/timeCRUN-2006-2007_original_resampled.nc 
/data/proj/UrbanSIS/workspace/JR/hype2grid/Stockholm/Harmonie/timeCRUN-2012-2014_original_resampled.nc
 /data/proj/UrbanSIS/workspace/JR/hype2grid\
/Stockholm/Harmonie/timeCRUN.nc" ;
                :Conventions = "CF-1.6" ;
                :contact1 = "Lena Stromback, SMHI, [email protected]" ;
                :Originating_center = "Swedish Meteorological and Hydrological 
Institute (SMHI)" ;
                :Downscaling_model = "S-HYPE2012_version_4_0_0 adapted for 
Urban SIS" ;
                :Downscaling_projection = "SWEREF-99 1800" ;
                :Downscaled_area = "Watershed based on Urban Atlas" ;
                :Forcing_boundary_conditions = "Urban SIS Harmonie Stockholm 
historic" ;
                :Topography_routing = "SVAR 
http://www.smhi.se/publikationer/svar-svenskt-vattenarkiv-1.17833"; ;
                :Land_use = "Urban Atlas 2012 
http://land.copernicus.eu/local/urban-atlas/urban-atlas-2012, CORINE Land COVER 
2000 
http://www.eea.europa.eu/data-and-maps/data/corine-land-cover-2000-clc2000-seam\
less-vector-database" ;
                :Soil_type = "SGU http://www.sgu.se/"; ;
                :Lake_information = "SVAR 
http://www.smhi.se/publikationer/svar-svenskt-vattenarkiv-1.17833"; ;
                :nco_openmp_thread_number = 1 ;
                :NCO = "4.4.4" ;
                :frequency = "mon" ;
data:

...


Kind regards,

Frank van der Stelt
Systems developer
SMHI - Swedish Meteorological and Hydrological Institute








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