jlec        15/02/24 16:47:47

  Modified:             ChangeLog
  Added:                seqan-2.0.0.ebuild
  Log:
  Version Bump, #540692
  
  (Portage version: 2.2.17/cvs/Linux x86_64, signed Manifest commit with key 
B9D4F231BD1558AB!)

Revision  Changes    Path
1.9                  sci-biology/seqan/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/seqan/ChangeLog?rev=1.9&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/seqan/ChangeLog?rev=1.9&content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/seqan/ChangeLog?r1=1.8&r2=1.9

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/seqan/ChangeLog,v
retrieving revision 1.8
retrieving revision 1.9
diff -u -r1.8 -r1.9
--- ChangeLog   19 Feb 2015 22:03:53 -0000      1.8
+++ ChangeLog   24 Feb 2015 16:47:47 -0000      1.9
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/seqan
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/seqan/ChangeLog,v 1.8 
2015/02/19 22:03:53 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/seqan/ChangeLog,v 1.9 
2015/02/24 16:47:47 jlec Exp $
+
+*seqan-2.0.0 (24 Feb 2015)
+
+  24 Feb 2015; Justin Lecher <[email protected]> +files/seqan-2.0.0-zlib.patch,
+  +seqan-2.0.0.ebuild:
+  Version Bump, #540692
 
   19 Feb 2015; Justin Lecher <[email protected]> seqan-1.4.2.ebuild:
   Prefix love, #540690; thanks  Michael Schubert for the patch



1.1                  sci-biology/seqan/seqan-2.0.0.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/seqan/seqan-2.0.0.ebuild?rev=1.1&view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/seqan/seqan-2.0.0.ebuild?rev=1.1&content-type=text/plain

Index: seqan-2.0.0.ebuild
===================================================================
# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/seqan/seqan-2.0.0.ebuild,v 1.1 
2015/02/24 16:47:47 jlec Exp $

EAPI=5

PYTHON_COMPAT=( python2_7 )

inherit cmake-utils flag-o-matic python-single-r1

DESCRIPTION="C++ Sequence Analysis Library"
HOMEPAGE="http://www.seqan.de/";
SRC_URI="http://packages.${PN}.de/${PN}-src/${PN}-src-${PV}.tar.gz";

SLOT="0"
LICENSE="BSD GPL-3"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
IUSE="cpu_flags_x86_sse4_1"

REQUIRED_USE="${PYTHON_REQUIRED_USE} cpu_flags_x86_sse4_1"

RDEPEND="${PYTHON_DEPS}
        dev-libs/boost:=
        sci-biology/samtools"
DEPEND="${RDEPEND}"

S="${WORKDIR}"/${PN}-${PN}-v${PV}

PATCHES=(
        "${FILESDIR}"/${P}-zlib.patch
)

src_prepare() {
        rm -f \
                util/cmake/FindZLIB.cmake \
                || die
        cmake-utils_src_prepare
}

src_configure() {
        local mycmakeargs=(
                -DBoost_NO_BOOST_CMAKE=ON
        )
        cmake-utils_src_configure
}

src_install() {
        mkdir -p "${BUILD_DIR}"/docs/html || die
        cmake-utils_src_install
        chmod 755 "${ED}"/usr/bin/*sh || die
}




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