commit: fd08b2a5d7d48adea7a3f1d07d3783c15ce0f24b
Author: Alexey Shvetsov <alexxy <AT> gentoo <DOT> org>
AuthorDate: Sun Sep 29 13:31:30 2024 +0000
Commit: Alexey Shvetsov <alexxy <AT> gentoo <DOT> org>
CommitDate: Sun Sep 29 13:33:31 2024 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=fd08b2a5
sci-biology/cutadapt: new package, add 4.9
Signed-off-by: Alexey Shvetsov <alexxy <AT> gentoo.org>
sci-biology/cutadapt/cutadapt-4.9.ebuild | 28 ++++++++++++++++++++++++++++
sci-biology/cutadapt/metadata.xml | 12 ++++++++++++
2 files changed, 40 insertions(+)
diff --git a/sci-biology/cutadapt/cutadapt-4.9.ebuild
b/sci-biology/cutadapt/cutadapt-4.9.ebuild
new file mode 100644
index 000000000..cd1a8fe7c
--- /dev/null
+++ b/sci-biology/cutadapt/cutadapt-4.9.ebuild
@@ -0,0 +1,28 @@
+# Copyright 1999-2020 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+PYTHON_COMPAT=( python3_{10..13} )
+DISTUTILS_USE_PEP517=setuptools
+
+inherit distutils-r1 pypi
+
+DESCRIPTION="Adapter trimming and other preprocessing of high-throughput
sequencing reads"
+HOMEPAGE="https://github.com/marcelm/cutadapt/";
+SRC_URI="$(pypi_sdist_url "${PN^}" "${PV}")"
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS="~amd64"
+
+IUSE="test"
+DEPEND="
+ >=dev-python/xopen-1.6.0[${PYTHON_USEDEP}]
+ >=dev-python/dnaio-1.2.0[${PYTHON_USEDEP}]
+"
+RDEPEND="
+ ${DEPEND}
+ test? ( dev-python/pytest )
+"
+distutils_enable_tests pytest
diff --git a/sci-biology/cutadapt/metadata.xml
b/sci-biology/cutadapt/metadata.xml
new file mode 100644
index 000000000..028038de8
--- /dev/null
+++ b/sci-biology/cutadapt/metadata.xml
@@ -0,0 +1,12 @@
+<?xml version='1.0' encoding='UTF-8'?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";>
+<pkgmetadata>
+ <maintainer type="project">
+ <email>[email protected]</email>
+ <name>Gentoo Science</name>
+ </maintainer>
+ <upstream>
+ <remote-id type="pypi">cutadapt</remote-id>
+ <remote-id type="github">marcelm/cutadapt</remote-id>
+ </upstream>
+</pkgmetadata>
