commit: a1be4835d0587180a3578c36c533c7b89edabf2f Author: Michał Górny <mgorny <AT> gentoo <DOT> org> AuthorDate: Sat Sep 21 18:09:54 2024 +0000 Commit: Michał Górny <mgorny <AT> gentoo <DOT> org> CommitDate: Sat Sep 21 18:09:54 2024 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=a1be4835
dev-python/tables: Remove old Signed-off-by: Michał Górny <mgorny <AT> gentoo.org> dev-python/tables/Manifest | 2 - dev-python/tables/files/tables-3.10.0-pypy.patch | 42 ---- dev-python/tables/files/tables-3.9.2-numpy-2.patch | 264 --------------------- dev-python/tables/files/tables-3.9.2-py313.patch | 73 ------ dev-python/tables/tables-3.10.0.ebuild | 80 ------- dev-python/tables/tables-3.9.2-r1.ebuild | 89 ------- 6 files changed, 550 deletions(-) diff --git a/dev-python/tables/Manifest b/dev-python/tables/Manifest index 3d017adf6b35..914db9a3d26e 100644 --- a/dev-python/tables/Manifest +++ b/dev-python/tables/Manifest @@ -1,3 +1 @@ -DIST tables-3.10.0.tar.gz 4762618 BLAKE2B 351ec7e1bb9f0e4a43686b51911793aac32260d88418e1dac0b4fb815fd0f48543e139d1b7ea5607c1368578db4c6513a36d6379f4038cc53fbead4a436ce50d SHA512 10b4d2d1df5c692b72ad599cebc81fc2ef56f432a8d8059c2cede25a201076d12aff3e8874dafb8ef1d41dcc6c9151523f7e4fae3971443f79d051c6f8fcbc88 DIST tables-3.10.1.tar.gz 4762413 BLAKE2B b185e839767cb339bf5e3760d6d37593eb57551776c563bd99eaaeabc5ee3c041f3b86a03995294dbfaa1a27b0581b0c4544fac0dbdfacd507fe487c1256a2cc SHA512 7590dccefdd718d170ac288d391173ed540760a911f53fd39e37dd74237dc554f9363c8d9d4d518f067da299d71a1d8cb4a40134b1afaf79daa0a17de248caf5 -DIST tables-3.9.2.tar.gz 4683437 BLAKE2B 7044aede85d9eca67260a309d19b5c80944b80b2107f665296ad7ae6a3c3f9a8717a41ae7298a5ae45e5b9de7ae0a6678a83d4bd914bd8709512333e783367bc SHA512 9b416222304b7798585a20d4d7d61934023f151d4262a58a4f0ee969aa365264270c12a734461a194d2c857a13a8e09fb7a1386042267113f601560c041cecd9 diff --git a/dev-python/tables/files/tables-3.10.0-pypy.patch b/dev-python/tables/files/tables-3.10.0-pypy.patch deleted file mode 100644 index f27c99eadfb8..000000000000 --- a/dev-python/tables/files/tables-3.10.0-pypy.patch +++ /dev/null @@ -1,42 +0,0 @@ -From c04a456a3e3f7c55722b8c77144991c657fc3af6 Mon Sep 17 00:00:00 2001 -From: =?UTF-8?q?Micha=C5=82=20G=C3=B3rny?= <[email protected]> -Date: Wed, 14 Aug 2024 13:34:22 +0200 -Subject: [PATCH] FIX: Pass `refcheck=False` to `np.ndarray.resize()` for PyPy - compat - -Pass `refcheck=False` when resizing an `np.ndarray` in place, in order -to fix a test failure on PyPy3: - -``` -Traceback (most recent call last): - File "/tmp/PyTables/tables/tests/test_direct_chunk.py", line 266, in test_write_chunk_missing1 - return self._test_write_chunk_missing(shrink_after=False) - File "/tmp/PyTables/tables/tests/test_direct_chunk.py", line 255, in _test_write_chunk_missing - new_obj.resize(self.array.shape) -ValueError: cannot resize an array with refcheck=True on PyPy. -Use the np.resize function or refcheck=False -``` - -Since the object is created immediately above the `.resize()` call, -adding `refcheck=False` should be entirely safe. Furthermore, -unlike `np.resize()` this preserves the current behavior when new shape -is larger than the original. - -Fixes #1202 ---- - tables/tests/test_direct_chunk.py | 2 +- - 1 file changed, 1 insertion(+), 1 deletion(-) - -diff --git a/tables/tests/test_direct_chunk.py b/tables/tests/test_direct_chunk.py -index ccc82516d..ed290d7e6 100644 ---- a/tables/tests/test_direct_chunk.py -+++ b/tables/tests/test_direct_chunk.py -@@ -252,7 +252,7 @@ def _test_write_chunk_missing(self, shrink_after): - self.array.truncate(self.shape[0] - 1) - - new_obj = self.obj.copy() -- new_obj.resize(self.array.shape) -+ new_obj.resize(self.array.shape, refcheck=False) - obj_slice = tuple(slice(s, s + cs) for (s, cs) - in zip(chunk_start, self.chunkshape)) - if not shrink_after: diff --git a/dev-python/tables/files/tables-3.9.2-numpy-2.patch b/dev-python/tables/files/tables-3.9.2-numpy-2.patch deleted file mode 100644 index a3d56d13f1a8..000000000000 --- a/dev-python/tables/files/tables-3.9.2-numpy-2.patch +++ /dev/null @@ -1,264 +0,0 @@ -diff --git a/setup.py b/setup.py -index 48dc6ca5..e8957c1f 100755 ---- a/setup.py -+++ b/setup.py -@@ -736,7 +736,10 @@ if __name__ == "__main__": - - # ----------------------------------------------------------------- - -- def_macros = [("NDEBUG", 1)] -+ def_macros = [ -+ ("NDEBUG", 1), -+ ("NPY_TARGET_VERSION", "NPY_1_20_API_VERSION"), -+ ] - - # Define macros for Windows platform - if os.name == "nt": -diff --git a/src/utils.c b/src/utils.c -index 15fce02d..b28dbc90 100644 ---- a/src/utils.c -+++ b/src/utils.c -@@ -765,8 +765,8 @@ hid_t create_ieee_complex64(const char *byteorder) { - return float_id; - } - -- H5Tinsert(complex_id, "r", HOFFSET(npy_complex64, real), float_id); -- H5Tinsert(complex_id, "i", HOFFSET(npy_complex64, imag), float_id); -+ H5Tinsert(complex_id, "r", 0, float_id); -+ H5Tinsert(complex_id, "i", 4, float_id); - H5Tclose(float_id); - return complex_id; - } -@@ -790,8 +790,8 @@ hid_t create_ieee_complex128(const char *byteorder) { - return float_id; - } - -- H5Tinsert(complex_id, "r", HOFFSET(npy_complex128, real), float_id); -- H5Tinsert(complex_id, "i", HOFFSET(npy_complex128, imag), float_id); -+ H5Tinsert(complex_id, "r", 0, float_id); -+ H5Tinsert(complex_id, "i", 8, float_id); - H5Tclose(float_id); - return complex_id; - } -@@ -822,8 +822,8 @@ hid_t create_ieee_complex192(const char *byteorder) { - return err; - } - -- H5Tinsert(complex_id, "r", HOFFSET(npy_complex192, real), float_id); -- H5Tinsert(complex_id, "i", HOFFSET(npy_complex192, imag), float_id); -+ H5Tinsert(complex_id, "r", 0, float_id); -+ H5Tinsert(complex_id, "i", 12, float_id); - H5Tclose(float_id); - return complex_id; - } -@@ -854,8 +854,8 @@ hid_t create_ieee_complex256(const char *byteorder) { - return err; - } - -- H5Tinsert(complex_id, "r", HOFFSET(npy_complex256, real), float_id); -- H5Tinsert(complex_id, "i", HOFFSET(npy_complex256, imag), float_id); -+ H5Tinsert(complex_id, "r", 0, float_id); -+ H5Tinsert(complex_id, "i", 16, float_id); - H5Tclose(float_id); - return complex_id; - } -diff --git a/tables/atom.py b/tables/atom.py -index 56ab6423..5d4fba2b 100644 ---- a/tables/atom.py -+++ b/tables/atom.py -@@ -276,15 +276,15 @@ class Atom(metaclass=MetaAtom): - >>> atom1 = StringAtom(itemsize=10) # same as ``atom2`` - >>> atom2 = Atom.from_kind('string', 10) # same as ``atom1`` - >>> atom3 = IntAtom() -- >>> atom1 == 'foo' -+ >>> bool(atom1 == 'foo') - False -- >>> atom1 == atom2 -+ >>> bool(atom1 == atom2) - True -- >>> atom2 != atom1 -+ >>> bool(atom2 != atom1) - False -- >>> atom1 == atom3 -+ >>> bool(atom1 == atom3) - False -- >>> atom3 != atom2 -+ >>> bool(atom3 != atom2) - True - - """ -diff --git a/tables/index.py b/tables/index.py -index e8c8caf7..28ff37e2 100644 ---- a/tables/index.py -+++ b/tables/index.py -@@ -581,7 +581,8 @@ class Index(NotLoggedMixin, Group, indexesextension.Index): - # Add a second offset in this case - # First normalize the number of rows - offset2 = (nrow % self.nslicesblock) * slicesize // lbucket -- idx += offset2 -+ assert offset2 < 2**(indsize*8) -+ idx += np.asarray(offset2).astype(idx.dtype) - # Add the last row at the beginning of arr & idx (if needed) - if (indsize == 8 and nelementsILR > 0): - # It is possible that the values in LR are already sorted. -@@ -622,11 +623,11 @@ class Index(NotLoggedMixin, Group, indexesextension.Index): - show_stats("Entering final_idx32", tref) - # Do an upcast first in order to add the offset. - idx = idx.astype('uint64') -- idx += offset -+ idx += np.asarray(offset).astype(idx.dtype) - # The next partition is valid up to table sizes of - # 2**30 * 2**18 = 2**48 bytes, that is, 256 Tera-elements, - # which should be a safe figure, at least for a while. -- idx //= self.lbucket -+ idx //= np.asarray(self.lbucket).astype(idx.dtype) - # After the division, we can downsize the indexes to 'uint32' - idx = idx.astype('uint32') - if profile: -@@ -2002,7 +2003,7 @@ class Index(NotLoggedMixin, Group, indexesextension.Index): - else: - self.indicesLR._read_index_slice(start, stop, idx) - if indsize == 8: -- idx //= lbucket -+ idx //= np.asarray(lbucket).astype(idx.dtype) - elif indsize == 2: - # The chunkmap size cannot be never larger than 'int_' - idx = idx.astype("int_") -diff --git a/tables/tests/common.py b/tables/tests/common.py -index 31378a88..1992f39a 100644 ---- a/tables/tests/common.py -+++ b/tables/tests/common.py -@@ -205,7 +205,7 @@ def allequal(a, b, flavor="numpy"): - return result - - --def areArraysEqual(arr1, arr2): -+def areArraysEqual(arr1, arr2, *, check_type=True): - """Are both `arr1` and `arr2` equal arrays? - - Arguments can be regular NumPy arrays, chararray arrays or -@@ -217,8 +217,8 @@ def areArraysEqual(arr1, arr2): - t1 = type(arr1) - t2 = type(arr2) - -- if not ((hasattr(arr1, 'dtype') and arr1.dtype == arr2.dtype) or -- issubclass(t1, t2) or issubclass(t2, t1)): -+ if check_type and not ((hasattr(arr1, 'dtype') and arr1.dtype == arr2.dtype) or -+ issubclass(t1, t2) or issubclass(t2, t1)): - return False - - return np.all(arr1 == arr2) -diff --git a/tables/tests/test_expression.py b/tables/tests/test_expression.py -index 018d4208..d9c0e990 100644 ---- a/tables/tests/test_expression.py -+++ b/tables/tests/test_expression.py -@@ -265,9 +265,12 @@ class MixedContainersTestCase(common.TempFileMixin, common.PyTablesTestCase): - if common.verbose: - print("Computed expression:", repr(r1), r1.dtype) - print("Should look like:", repr(r2), r2.dtype) -- self.assertTrue( -- r1.shape == r2.shape and r1.dtype == r2.dtype and r1 == r2, -- "Evaluate is returning a wrong value.") -+ msg = f"Evaluate is returning a wrong value: {expr_str}\n{r1=}\n{r2=}" -+ self.assertEqual(r1.shape, r2.shape, msg=msg) -+ # In something like 2 * np.in16(3) + np.int16(2) the result is still a -+ # np.int16 in NumPy 2.0, so we shouldn't actually check this: -+ # self.assertEqual(r1.dtype, r2.dtype, msg=msg) -+ self.assertEqual(r1, r2, msg=msg) - - def test01a_out(self): - """Checking expressions with mixed objects (`out` param)""" -@@ -305,8 +308,9 @@ class MixedContainersTestCase(common.TempFileMixin, common.PyTablesTestCase): - if common.verbose: - print("Computed expression:", repr(r1), r1.dtype) - print("Should look like:", repr(r2), r2.dtype) -- self.assertTrue(common.areArraysEqual(r1, r2), -- "Evaluate is returning a wrong value.") -+ msg = f"Evaluate is returning a wrong value: {expr_str}\n{r1=}\n{r2=}" -+ # On NumPy 2 type promotion is different so don't check type here -+ self.assertTrue(common.areArraysEqual(r1, r2, check_type=False), msg=msg) - - def test02a_sss(self): - """Checking mixed objects and start, stop, step (I)""" -diff --git a/tables/tests/test_indexvalues.py b/tables/tests/test_indexvalues.py -index fac33af8..85ca38c3 100644 ---- a/tables/tests/test_indexvalues.py -+++ b/tables/tests/test_indexvalues.py -@@ -2296,6 +2296,11 @@ class SelectValuesTestCase(common.TempFileMixin, common.PyTablesTestCase): - self.assertFalse(t1var3.index.dirty) - self.assertFalse(t1var4.index.dirty) - -+ # TODO: IT IS DIRTY BECAUSE THIS FIXES THINGS FOR FINSV2aTestCase, -+ # which otherwise fails a test a few lines below! -+ for col in table1.colinstances.values(): -+ col.reindex() -+ - # Do some selections and check the results - # First selection: string - # Convert the limits to the appropriate type -@@ -2318,11 +2323,15 @@ class SelectValuesTestCase(common.TempFileMixin, common.PyTablesTestCase): - # Second selection: bool - results1 = [p["var2"] for p in table1.where('t1var2 == True')] - results2 = [p["var2"] for p in table2 if p["var2"] is True] -- if common.verbose: -- print("Length results:", len(results1)) -- print("Should be:", len(results2)) -- self.assertEqual(len(results1), len(results2)) -- self.assertEqual(results1, results2) -+ t2var1_vals = [p["var1"] for p in table2] -+ t2var2_vals = [p["var2"] for p in table2] -+ msg = ( -+ f"Incorrect results for t1var2[n] == True where\n" -+ f"t2var1_vals={repr(t2var1_vals)}\nt2var2_vals={repr(t2var2_vals)}\n" -+ f"\n{results1=}\n{results2=}" -+ ) -+ self.assertEqual(len(results1), len(results2), msg=msg) -+ self.assertEqual(results1, results2, msg=msg) - - # Third selection: int - # Convert the limits to the appropriate type -@@ -3228,7 +3237,9 @@ class LastRowReuseBuffers(common.PyTablesTestCase): - - - normal_tests = ( -- "SV1aTestCase", "SV2aTestCase", "SV3aTestCase", -+ "SV1aTestCase", -+ "SV2aTestCase", -+ "SV3aTestCase", - ) - - heavy_tests = ( -diff --git a/tables/utils.py b/tables/utils.py -index e11e5ba7..7d786e32 100644 ---- a/tables/utils.py -+++ b/tables/utils.py -@@ -25,6 +25,11 @@ byteorders = { - SizeType = np.int64 - - -+copy_if_needed = ( -+ None if np.lib.NumpyVersion(np.__version__) >= "2.0.0" else False -+) -+ -+ - def correct_byteorder(ptype, byteorder): - """Fix the byteorder depending on the PyTables types.""" - -@@ -78,7 +83,7 @@ def idx2long(index): - # with atom from a generic python type. If copy is stated as True, it - # is assured that it will return a copy of the object and never the same - # object or a new one sharing the same memory. --def convert_to_np_atom(arr, atom, copy=False): -+def convert_to_np_atom(arr, atom, copy=copy_if_needed): - """Convert a generic object into a NumPy object compliant with atom.""" - - # First, convert the object into a NumPy array -@@ -112,7 +117,7 @@ def convert_to_np_atom2(object, atom): - - # Check whether the object needs to be copied to make the operation - # safe to in-place conversion. -- copy = atom.type in ['time64'] -+ copy = True if atom.type in ['time64'] else copy_if_needed - nparr = convert_to_np_atom(object, atom, copy) - # Finally, check the byteorder and change it if needed - byteorder = byteorders[nparr.dtype.byteorder] diff --git a/dev-python/tables/files/tables-3.9.2-py313.patch b/dev-python/tables/files/tables-3.9.2-py313.patch deleted file mode 100644 index 660c5615765f..000000000000 --- a/dev-python/tables/files/tables-3.9.2-py313.patch +++ /dev/null @@ -1,73 +0,0 @@ -From 4a1b480e7e3758cf2cf06354ec5720020db16ce7 Mon Sep 17 00:00:00 2001 -From: Antonio Valentino <[email protected]> -Date: Sun, 19 May 2024 17:39:47 +0200 -Subject: [PATCH] Fix compatibility with Python v3.13 (Closes: #1166) - -The unittest.makeSuite function is not available in Python 3.13. ---- -diff --git a/tables/tests/test_aux.py b/tables/tests/test_aux.py -index 95f34ee16..cf4f022de 100644 ---- a/tables/tests/test_aux.py -+++ b/tables/tests/test_aux.py -@@ -2,6 +2,7 @@ - import numpy as np - - import tables as tb -+from tables.tests.common import make_suite - - - class TestAuxiliaryFunctions(unittest.TestCase): -diff --git a/tables/nodes/tests/test_filenode.py b/tables/nodes/tests/test_filenode.py -index c2754218a..3572cc38f 100644 ---- a/tables/nodes/tests/test_filenode.py -+++ b/tables/nodes/tests/test_filenode.py -@@ -9,7 +9,7 @@ - from ... import open_file, file, NoSuchNodeError - from ...nodes import filenode - from ...tests.common import ( -- unittest, TempFileMixin, parse_argv, print_versions, -+ unittest, TempFileMixin, parse_argv, print_versions, make_suite, - PyTablesTestCase as TestCase) - - -diff --git a/tables/tests/common.py b/tables/tests/common.py -index 31378a880..918b17247 100644 ---- a/tables/tests/common.py -+++ b/tables/tests/common.py -@@ -366,3 +366,10 @@ def test00(self): - print(f"VmSize: {vmsize:>7} kB\tVmRSS: {vmrss:>7} kB") - print(f"VmData: {vmdata:>7} kB\tVmStk: {vmstk:>7} kB") - print(f"VmExe: {vmexe:>7} kB\tVmLib: {vmlib:>7} kB") -+ -+ -+try: -+ from unittest import makeSuite as make_suite -+except ImportError: -+ def make_suite(test_case_class): -+ return unittest.TestLoader().loadTestsFromTestCase(test_case_class) -From 424784895b0fb15ad06707ce60f9829cef4f11e2 Mon Sep 17 00:00:00 2001 -From: =?UTF-8?q?Miro=20Hron=C4=8Dok?= <[email protected]> -Date: Mon, 3 Jun 2024 17:21:38 +0200 -Subject: [PATCH] Make tables.tests.common.make_suite() accept the prefix - argument - -...as test_queries.py uses it. ---- - tables/tests/common.py | 7 +++++-- - 1 file changed, 5 insertions(+), 2 deletions(-) - -diff --git a/tables/tests/common.py b/tables/tests/common.py -index 918b17247..1d2e5feab 100644 ---- a/tables/tests/common.py -+++ b/tables/tests/common.py -@@ -371,5 +371,8 @@ def test00(self): - try: - from unittest import makeSuite as make_suite - except ImportError: -- def make_suite(test_case_class): -- return unittest.TestLoader().loadTestsFromTestCase(test_case_class) -+ def make_suite(test_case_class, *, prefix=None): -+ loader = unittest.TestLoader() -+ if prefix: -+ loader.testMethodPrefix = prefix -+ return loader.loadTestsFromTestCase(test_case_class) diff --git a/dev-python/tables/tables-3.10.0.ebuild b/dev-python/tables/tables-3.10.0.ebuild deleted file mode 100644 index 457bf9dd44aa..000000000000 --- a/dev-python/tables/tables-3.10.0.ebuild +++ /dev/null @@ -1,80 +0,0 @@ -# Copyright 1999-2024 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=8 - -DISTUTILS_EXT=1 -DISTUTILS_USE_PEP517=setuptools -PYTHON_COMPAT=( pypy3 python3_{10..13} ) -PYTHON_REQ_USE="threads(+)" - -inherit distutils-r1 prefix pypi - -DESCRIPTION="Hierarchical datasets for Python" -HOMEPAGE=" - https://www.pytables.org/ - https://github.com/PyTables/PyTables/ - https://pypi.org/project/tables/ -" - -LICENSE="BSD" -SLOT="0" -KEYWORDS="~amd64 ~arm ~arm64 ~loong ~ppc64 ~riscv ~sparc ~x86 ~amd64-linux ~x86-linux" -IUSE="+cpudetection examples test" -RESTRICT="!test? ( test )" - -DEPEND=" - app-arch/bzip2:0= - app-arch/lz4:0= - >=app-arch/zstd-1.0.0:= - >=dev-libs/c-blosc-1.11.1:0= - >=dev-libs/c-blosc2-2.11.0:= - dev-libs/lzo:2= - >=dev-python/numpy-1.19.0:=[${PYTHON_USEDEP}] - >=sci-libs/hdf5-1.8.4:= -" -RDEPEND=" - ${DEPEND} - >=dev-python/numexpr-2.6.2[${PYTHON_USEDEP}] - dev-python/packaging[${PYTHON_USEDEP}] - cpudetection? ( dev-python/py-cpuinfo[${PYTHON_USEDEP}] ) -" -BDEPEND=" - >=dev-python/cython-0.21[${PYTHON_USEDEP}] - virtual/pkgconfig - cpudetection? ( dev-python/py-cpuinfo[${PYTHON_USEDEP}] ) - test? ( - ${RDEPEND} - ) -" - -python_prepare_all() { - local PATCHES=( - # https://github.com/PyTables/PyTables/pull/1205 - "${FILESDIR}/${P}-pypy.patch" - ) - - rm -r c-blosc/{blosc,internal-complibs} || die - - distutils-r1_python_prepare_all - - sed -i -e '/blosc2/d' -e '/numpy/s:, <2::' pyproject.toml || die - hprefixify -w '/prefixes =/' setup.py - - export PYTABLES_NO_EMBEDDED_LIBS=1 - export USE_PKGCONFIG=TRUE -} - -python_test() { - cd "${BUILD_DIR}/install$(python_get_sitedir)" || die - "${EPYTHON}" tables/tests/test_all.py -v || die -} - -python_install_all() { - distutils-r1_python_install_all - - if use examples; then - dodoc -r contrib examples - docompress -x /usr/share/doc/${PF}/{contrib,examples} - fi -} diff --git a/dev-python/tables/tables-3.9.2-r1.ebuild b/dev-python/tables/tables-3.9.2-r1.ebuild deleted file mode 100644 index 03c62e62a5a9..000000000000 --- a/dev-python/tables/tables-3.9.2-r1.ebuild +++ /dev/null @@ -1,89 +0,0 @@ -# Copyright 1999-2024 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=8 - -DISTUTILS_EXT=1 -DISTUTILS_USE_PEP517=setuptools -PYTHON_COMPAT=( pypy3 python3_{10..13} ) -PYTHON_REQ_USE="threads(+)" - -inherit distutils-r1 prefix pypi - -DESCRIPTION="Hierarchical datasets for Python" -HOMEPAGE=" - https://www.pytables.org/ - https://github.com/PyTables/PyTables/ - https://pypi.org/project/tables/ -" - -LICENSE="BSD" -SLOT="0" -KEYWORDS="amd64 arm arm64 ~loong ppc64 ~riscv ~sparc x86 ~amd64-linux ~x86-linux" -IUSE="+cpudetection examples test" -RESTRICT="!test? ( test )" - -DEPEND=" - app-arch/bzip2:0= - app-arch/lz4:0= - >=app-arch/zstd-1.0.0:= - >=dev-libs/c-blosc-1.11.1:0= - >=dev-libs/c-blosc2-2.11.0:= - dev-libs/lzo:2= - >=dev-python/numpy-1.19.0:=[${PYTHON_USEDEP}] - >=sci-libs/hdf5-1.8.4:= -" -RDEPEND=" - ${DEPEND} - >=dev-python/numexpr-2.6.2[${PYTHON_USEDEP}] - dev-python/packaging[${PYTHON_USEDEP}] - cpudetection? ( dev-python/py-cpuinfo[${PYTHON_USEDEP}] ) -" -BDEPEND=" - >=dev-python/cython-0.21[${PYTHON_USEDEP}] - virtual/pkgconfig - cpudetection? ( dev-python/py-cpuinfo[${PYTHON_USEDEP}] ) - test? ( - ${RDEPEND} - ) -" - -python_prepare_all() { - local PATCHES=( - # https://github.com/PyTables/PyTables/pull/1176 - "${FILESDIR}/${P}-numpy-2.patch" - # https://github.com/PyTables/PyTables/commit/4a1b480e7e3758cf2cf06354ec5720020db16ce7 - # https://github.com/PyTables/PyTables/commit/424784895b0fb15ad06707ce60f9829cef4f11e2 - "${FILESDIR}/${P}-py313.patch" - ) - - rm -r c-blosc/{blosc,internal-complibs} || die - - # part of https://github.com/PyTables/PyTables/commit/4a1b480e7e3758cf2cf06354ec5720020db16ce7 - # (warning: do it *before* patching, so it doesn't modify - # the added function) - find -name '*.py' -exec \ - sed -i -e 's:unittest[.]makeSuite:make_suite:' {} + || die - - distutils-r1_python_prepare_all - - sed -i -e '/blosc2/d' pyproject.toml || die - hprefixify -w '/prefixes =/' setup.py - - export PYTABLES_NO_EMBEDDED_LIBS=1 - export USE_PKGCONFIG=TRUE -} - -python_test() { - cd "${BUILD_DIR}/install$(python_get_sitedir)" || die - "${EPYTHON}" tables/tests/test_all.py -v || die -} - -python_install_all() { - distutils-r1_python_install_all - - if use examples; then - dodoc -r contrib examples - docompress -x /usr/share/doc/${PF}/{contrib,examples} - fi -}
