commit: e9427f8954a1efb68fa1c95e9e111f226e9500a1
Author: Anna (cybertailor) Vyalkova <cyber+gentoo <AT> sysrq <DOT> in>
AuthorDate: Tue Jul 9 15:47:57 2024 +0000
Commit: Anna Vyalkova <cyber+gentoo <AT> sysrq <DOT> in>
CommitDate: Sun Jul 14 07:27:10 2024 +0000
URL: https://gitweb.gentoo.org/repo/proj/guru.git/commit/?id=e9427f89
sci-biology/cmdock: drop 0.2.0-r0
Signed-off-by: Anna (cybertailor) Vyalkova <cyber+gentoo <AT> sysrq.in>
sci-biology/cmdock/cmdock-0.2.0.ebuild | 112 ---------------------------------
1 file changed, 112 deletions(-)
diff --git a/sci-biology/cmdock/cmdock-0.2.0.ebuild
b/sci-biology/cmdock/cmdock-0.2.0.ebuild
deleted file mode 100644
index 3d1c2f035..000000000
--- a/sci-biology/cmdock/cmdock-0.2.0.ebuild
+++ /dev/null
@@ -1,112 +0,0 @@
-# Copyright 2021-2024 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-PYTHON_COMPAT=( python3_{10..12} )
-BOINC_APP_OPTIONAL="true"
-inherit boinc-app flag-o-matic meson optfeature python-any-r1
-
-DESCRIPTION="Program for docking ligands to proteins and nucleic acids"
-HOMEPAGE="https://gitlab.com/Jukic/cmdock";
-SRC_URI="https://gitlab.com/Jukic/${PN}/-/archive/v${PV}/${PN}-v${PV}.tar.bz2";
-S="${WORKDIR}/${PN}-v${PV}"
-
-LICENSE="LGPL-3 ZLIB"
-SLOT="0/${PV}"
-KEYWORDS="~amd64"
-IUSE="apidoc boinc cpu_flags_x86_sse2 doc test"
-RESTRICT="!test? ( test )"
-
-RDEPEND="
- boinc? ( sci-misc/boinc-wrapper )
-"
-DEPEND="
- dev-cpp/eigen:3
- dev-cpp/indicators
- >=dev-cpp/pcg-cpp-0.98.1_p20210406-r1
- dev-libs/cxxopts
-"
-BDEPEND="
- apidoc? (
- app-text/doxygen
- dev-texlive/texlive-fontutils
- )
- doc? (
- $(python_gen_any_dep '
- dev-python/insipid-sphinx-theme[${PYTHON_USEDEP}]
- dev-python/sphinx[${PYTHON_USEDEP}]
- ')
- )
- test? ( ${PYTHON_DEPS} )
-"
-
-DOCS=( README.md changelog.md )
-
-BOINC_MASTER_URL="https://www.sidock.si/sidock/";
-BOINC_INVITATION_CODE="Crunch_4Science"
-BOINC_APP_HELPTEXT=\
-"The easiest way to do something useful with this application
-is to attach it to SiDock@home BOINC project."
-
-INSTALL_PREFIX="${EPREFIX}/opt/${P}"
-
-python_check_deps() {
- use doc || return 0
-
- python_has_version "dev-python/sphinx[${PYTHON_USEDEP}]" &&
- python_has_version "dev-python/insipid-sphinx-theme[${PYTHON_USEDEP}]"
-}
-
-foreach_wrapper_job() {
- sed -e "s:@PREFIX@:${INSTALL_PREFIX}:g" -i "${1}" || die
-}
-
-src_prepare() {
- default
- python_fix_shebang "${S}"/bin
-}
-
-src_configure() {
- # very weird directory layout
- local emesonargs=(
- --prefix="${INSTALL_PREFIX}"
- $(meson_use apidoc)
- $(meson_use doc)
- $(meson_use test tests)
- -Ddocdir="${EPREFIX}"/usr/share/doc/${PF}
- )
- meson_src_configure
-
- use cpu_flags_x86_sse2 || append-cppflags "-DBUNDLE_NO_SSE"
-}
-
-src_install() {
- meson_src_install
- python_optimize "${D}${INSTALL_PREFIX}"/bin
-
- if use boinc; then
- doappinfo "${FILESDIR}"/app_info_${PV}.xml
- dowrapper cmdock-l
-
- # install cmdock executable
- exeinto "$(get_project_root)"
- exeopts --owner root --group boinc
- newexe "${D}${INSTALL_PREFIX}"/bin/cmdock cmdock-${PV}
-
- # install a blank file
- touch "${T}"/docking_out || die
- insinto "$(get_project_root)"
- insopts --owner root --group boinc
- doins "${T}"/docking_out
- fi
-}
-
-pkg_postinst() {
- optfeature "sdtether.py and sdrmsd.py scripts" "dev-python/numpy
sci-chemistry/openbabel[python]"
- use boinc && boinc-app_pkg_postinst
-}
-
-pkg_postrm() {
- use boinc && boinc-app_pkg_postrm
-}
