commit: 968ecda4bf1c56d55a2812fc8f9a2a4918030255 Author: Michael Schubert <mschu.dev <AT> gmail <DOT> com> AuthorDate: Wed Jun 12 11:21:56 2024 +0000 Commit: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org> CommitDate: Wed Jun 19 09:24:02 2024 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=968ecda4
sci-biology/multiqc: version bump 1.22.2 Signed-off-by: Michael Schubert <mschu.dev <AT> gmail.com> Closes: https://github.com/gentoo/sci/pull/1277 Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org> profiles/package.mask | 4 --- sci-biology/multiqc/multiqc-1.19.ebuild | 40 ----------------------------- sci-biology/multiqc/multiqc-1.22.2.ebuild | 42 +++++++++++++++++++++++++++++++ 3 files changed, 42 insertions(+), 44 deletions(-) diff --git a/profiles/package.mask b/profiles/package.mask index 48068ccf9..1b622a85b 100644 --- a/profiles/package.mask +++ b/profiles/package.mask @@ -30,9 +30,5 @@ #--- END OF EXAMPLES --- -# Andrew Ammerlaan <[email protected]> (2024-04-24) -# Dependencies dev-python/future removed -sci-biology/multiqc - # Andrew Ammerlaan <[email protected]> (2024-04-24) # reverse deps diff --git a/sci-biology/multiqc/multiqc-1.19.ebuild b/sci-biology/multiqc/multiqc-1.19.ebuild deleted file mode 100644 index 187f06c22..000000000 --- a/sci-biology/multiqc/multiqc-1.19.ebuild +++ /dev/null @@ -1,40 +0,0 @@ -# Copyright 1999-2023 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=8 - -DISTUTILS_USE_PEP517=setuptools -PYTHON_COMPAT=( python3_{10..11} ) - -inherit pypi distutils-r1 - -DESCRIPTION="Aggregate bioinformatics results across many samples into a single report" -HOMEPAGE="https://multiqc.info/"; - -LICENSE="GPL-3" -SLOT="0" -KEYWORDS="~amd64 ~amd64-linux" - -RDEPEND="dev-python/matplotlib[${PYTHON_USEDEP}] - dev-python/networkx[${PYTHON_USEDEP}] - dev-python/numpy[${PYTHON_USEDEP}] - dev-python/click[${PYTHON_USEDEP}] - dev-python/coloredlogs[${PYTHON_USEDEP}] - dev-python/future[${PYTHON_USEDEP}] - dev-python/jinja[${PYTHON_USEDEP}] - dev-python/lzstring[${PYTHON_USEDEP}] - dev-python/markdown[${PYTHON_USEDEP}] - dev-python/packaging[${PYTHON_USEDEP}] - dev-python/pyyaml[${PYTHON_USEDEP}] - dev-python/requests[${PYTHON_USEDEP}] - dev-python/rich[${PYTHON_USEDEP}] - dev-python/rich-click[${PYTHON_USEDEP}] - dev-python/simplejson[${PYTHON_USEDEP}] - dev-python/spectra[${PYTHON_USEDEP}] - dev-python/importlib-metadata[$PYTHON_USEDEP] - dev-python/humanize[$PYTHON_USEDEP] - dev-python/pyaml-env[$PYTHON_USEDEP]" - -# pypi tarball does not include tests -RESTRICT="test" -#distutils_enable_tests pytest diff --git a/sci-biology/multiqc/multiqc-1.22.2.ebuild b/sci-biology/multiqc/multiqc-1.22.2.ebuild new file mode 100644 index 000000000..bf45065aa --- /dev/null +++ b/sci-biology/multiqc/multiqc-1.22.2.ebuild @@ -0,0 +1,42 @@ +# Copyright 1999-2024 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +DISTUTILS_USE_PEP517=setuptools +PYTHON_COMPAT=( python3_{10..12} ) + +inherit distutils-r1 + +DESCRIPTION="Aggregate bioinformatics results across many samples into a single report" +HOMEPAGE="https://multiqc.info/"; +SRC_URI="https://github.com/MultiQC/MultiQC/archive/refs/tags/v${PV}.tar.gz -> ${P}.gh.tar.gz" +S="${WORKDIR}"/MultiQC-${PV} + +LICENSE="GPL-3" +SLOT="0" +KEYWORDS="~amd64 ~amd64-linux" + +RDEPEND="dev-python/click[${PYTHON_USEDEP}] + dev-python/humanize[${PYTHON_USEDEP}] + dev-python/importlib-metadata[${PYTHON_USEDEP}] + >=dev-python/jinja-3.0.0[${PYTHON_USEDEP}] + dev-python/markdown[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}] + dev-python/packaging[${PYTHON_USEDEP}] + dev-python/requests[${PYTHON_USEDEP}] + >=dev-python/pillow-10[${PYTHON_USEDEP}] + >=dev-python/plotly-5.18[${PYTHON_USEDEP}] + >=dev-python/pyyaml-4[${PYTHON_USEDEP}] + dev-python/pyaml-env[${PYTHON_USEDEP}] + >=dev-python/rich-10[${PYTHON_USEDEP}] + dev-python/rich-click[${PYTHON_USEDEP}] + dev-python/coloredlogs[${PYTHON_USEDEP}] + dev-python/tqdm[${PYTHON_USEDEP}] + >=dev-python/spectra-0.0.10[${PYTHON_USEDEP}] + >=dev-python/pydantic-2.7.1[${PYTHON_USEDEP}] + dev-python/typeguard[${PYTHON_USEDEP}]" +# dev-python/kaleido[${PYTHON_USEDEP}] # tested and is optional + +RESTRICT="test" # no items collected +#distutils_enable_tests pytest
