commit: be6977739d20a779f291c66eefb9cc896ff2e4e0
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Thu May 30 21:55:24 2024 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Thu May 30 21:55:24 2024 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=be697773
sci-biology/afni: drop 24.0.04-r1, 24.0.08-r1, 24.0.08-r2
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
sci-biology/afni/afni-24.0.04-r1.ebuild | 110 ----------------------------
sci-biology/afni/afni-24.0.08-r1.ebuild | 114 -----------------------------
sci-biology/afni/afni-24.0.08-r2.ebuild | 124 --------------------------------
3 files changed, 348 deletions(-)
diff --git a/sci-biology/afni/afni-24.0.04-r1.ebuild
b/sci-biology/afni/afni-24.0.04-r1.ebuild
deleted file mode 100644
index c5adfb6d8..000000000
--- a/sci-biology/afni/afni-24.0.04-r1.ebuild
+++ /dev/null
@@ -1,110 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-PYTHON_COMPAT=( python3_{10..13} )
-
-DISTUTILS_USE_PEP517=setuptools
-inherit cmake distutils-r1 toolchain-funcs
-
-GTS_HASH="962155a01f5a1b87bd64e3e3d880b4dbc2347ac7"
-NIFTI_HASH="da476fd27f46098f37f5c9c4c1baee01e559572c"
-GIFTI_HASH="d3e873d8539d9b469daf7db04093da1d7e73d4f7"
-
-DESCRIPTION="Analysis of Functional Neuroimages by NIMH"
-HOMEPAGE="https://afni.nimh.nih.gov/pub/dist/doc/htmldoc/";
-SRC_URI="
- https://github.com/afni/afni/archive/refs/tags/AFNI_${PV}.tar.gz ->
${P}.gh.tar.gz
-
https://github.com/NIFTI-Imaging/nifti_clib/archive/${NIFTI_HASH}.tar.gz ->
nifti-${NIFTI_HASH}.tar.gz
-
https://github.com/NIFTI-Imaging/gifti_clib/archive/${GIFTI_HASH}.tar.gz ->
gifti-${GIFTI_HASH}.tar.gz
- "
-
-S="${WORKDIR}/afni-AFNI_${PV}"
-
-LICENSE="GPL-3+"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="test whirlgif"
-RESTRICT="!test? ( test )"
-
-RDEPEND="
- dev-libs/glib:2
- dev-libs/libf2c
- dev-libs/expat
- dev-build/ninja
- media-libs/freeglut
- media-libs/glu
- media-libs/netpbm
- media-libs/qhull
- media-video/mpeg-tools
- sci-libs/gsl
- sci-libs/gts
- sys-devel/llvm:*
- sys-libs/libomp
- virtual/jpeg-compat:62
- x11-libs/libGLw
- x11-libs/libXft
- x11-libs/libXi
- x11-libs/libXmu
- x11-libs/libXpm
- x11-libs/libXt
- x11-libs/motif[-static-libs]
- "
-DEPEND="
- ${RDEPEND}
- app-shells/tcsh
- "
-
-src_prepare() {
- tar xf "${DISTDIR}/nifti-${NIFTI_HASH}.tar.gz" || die
- tar xf "${DISTDIR}/gifti-${GIFTI_HASH}.tar.gz" || die
- cmake_src_prepare
- default
- }
-
-src_configure() {
- if use !whirlgif; then
- eapply "${FILESDIR}/${P}-whirlgif.patch"
- fi
- export CFLAGS="-pthread ${CFLAGS}"
- export GIT_REPO_VERSION=3.0.1.1
- local mycmakeargs=(
- -DLIBDIR=/usr/$(get_libdir)
- -DNIFTI_INSTALL_LIBRARY_DIR=/usr/$(get_libdir)
- -DGIFTI_INSTALL_LIBRARY_DIR=/usr/$(get_libdir)
- -DGIFTI_INSTALL_LIB_DIR=/usr/$(get_libdir)
- -DAFNI_INSTALL_LIBRARY_DIR=/usr/$(get_libdir)
- -DCMAKE_INSTALL_LIBDIR=/usr/$(get_libdir)
- -DCOMP_COREBINARIES=ON
- -DUSE_SYSTEM_NIFTI=OFF
- -DUSE_SYSTEM_GIFTI=OFF
- -DUSE_SYSTEM_XMHTML=OFF
- -DUSE_SYSTEM_GTS=ON
-
-DFETCHCONTENT_SOURCE_DIR_NIFTI_CLIB="${WORKDIR}/nifti_clib-${NIFTI_HASH}"
-
-DFETCHCONTENT_SOURCE_DIR_GIFTI_CLIB="${WORKDIR}/gifti_clib-${GIFTI_HASH}"
- -DCOMP_GUI=ON
- -DCOMP_PLUGINS=ON
- -DUSE_OMP=ON
- -DCOMP_PYTHON=OFF
- -DUSE_SYSTEM_F2C=ON
- )
- tc-export CC
- cmake_src_configure
-}
-
-src_compile() {
- cmake_src_compile
- pushd src/python_scripts
- distutils-r1_src_compile
- popd
-}
-
-src_install() {
- cmake_src_install
- pushd src/python_scripts
- distutils-r1_src_install
- popd
- cd "${D}"
- rm usr/bin/mpeg_encode
-}
diff --git a/sci-biology/afni/afni-24.0.08-r1.ebuild
b/sci-biology/afni/afni-24.0.08-r1.ebuild
deleted file mode 100644
index 21ecf81a1..000000000
--- a/sci-biology/afni/afni-24.0.08-r1.ebuild
+++ /dev/null
@@ -1,114 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-PYTHON_COMPAT=( python3_{10..13} )
-
-DISTUTILS_USE_PEP517=setuptools
-inherit cmake distutils-r1 toolchain-funcs
-
-GTS_HASH="962155a01f5a1b87bd64e3e3d880b4dbc2347ac7"
-NIFTI_HASH="da476fd27f46098f37f5c9c4c1baee01e559572c"
-GIFTI_HASH="d3e873d8539d9b469daf7db04093da1d7e73d4f7"
-
-DESCRIPTION="Analysis of Functional Neuroimages by NIMH"
-HOMEPAGE="https://afni.nimh.nih.gov/pub/dist/doc/htmldoc/";
-SRC_URI="
- https://github.com/afni/afni/archive/refs/tags/AFNI_${PV}.tar.gz ->
${P}.gh.tar.gz
-
https://github.com/NIFTI-Imaging/nifti_clib/archive/${NIFTI_HASH}.tar.gz ->
nifti-${NIFTI_HASH}.tar.gz
-
https://github.com/NIFTI-Imaging/gifti_clib/archive/${GIFTI_HASH}.tar.gz ->
gifti-${GIFTI_HASH}.tar.gz
- "
-
-S="${WORKDIR}/afni-AFNI_${PV}"
-
-LICENSE="GPL-3+"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="test whirlgif"
-RESTRICT="!test? ( test )"
-
-RDEPEND="
- dev-libs/glib:2
- dev-libs/libf2c
- dev-libs/expat
- dev-build/ninja
- media-libs/freeglut
- media-libs/glu
- media-libs/netpbm
- media-libs/qhull
- media-video/mpeg-tools
- sci-libs/gsl
- sci-libs/gts
- sys-devel/llvm:*
- sys-libs/libomp
- virtual/jpeg-compat:62
- x11-libs/libGLw
- x11-libs/libXft
- x11-libs/libXi
- x11-libs/libXmu
- x11-libs/libXpm
- x11-libs/libXt
- x11-libs/motif[-static-libs]
- "
-DEPEND="
- ${RDEPEND}
- app-shells/tcsh
- "
-# Prospectively:
-#Update jpeg-compat to virtual/jpeg:0
-# look for xmhtlm
-
- #tar xf "${DISTDIR}/${GTS_HASH}.tar.gz" || die
-src_prepare() {
- tar xf "${DISTDIR}/nifti-${NIFTI_HASH}.tar.gz" || die
- tar xf "${DISTDIR}/gifti-${GIFTI_HASH}.tar.gz" || die
- cmake_src_prepare
- default
- }
-
-src_configure() {
- if use !whirlgif; then
- eapply "${FILESDIR}/${PN}-24.0.04-whirlgif.patch"
- fi
- export CFLAGS="-pthread ${CFLAGS}"
- export GIT_REPO_VERSION=3.0.1.1
- local mycmakeargs=(
- -DLIBDIR=/usr/$(get_libdir)
- -DNIFTI_INSTALL_LIBRARY_DIR=/usr/$(get_libdir)
- -DGIFTI_INSTALL_LIBRARY_DIR=/usr/$(get_libdir)
- -DGIFTI_INSTALL_LIB_DIR=/usr/$(get_libdir)
- -DAFNI_INSTALL_LIBRARY_DIR=/usr/$(get_libdir)
- -DCMAKE_INSTALL_LIBDIR=/usr/$(get_libdir)
- -DCOMP_COREBINARIES=ON
- -DUSE_SYSTEM_NIFTI=OFF
- -DUSE_SYSTEM_GIFTI=OFF
- -DUSE_SYSTEM_XMHTML=OFF
- -DUSE_SYSTEM_GTS=ON
-
-DFETCHCONTENT_SOURCE_DIR_NIFTI_CLIB="${WORKDIR}/nifti_clib-${NIFTI_HASH}"
-
-DFETCHCONTENT_SOURCE_DIR_GIFTI_CLIB="${WORKDIR}/gifti_clib-${GIFTI_HASH}"
- -DCOMP_GUI=ON
- -DCOMP_PLUGINS=ON
- -DUSE_OMP=ON
- -DCOMP_PYTHON=OFF
- -DUSE_SYSTEM_F2C=ON
- )
- tc-export CC
- cmake_src_configure
-}
-
-src_compile() {
- cmake_src_compile
- pushd src/python_scripts
- distutils-r1_src_compile
- popd
-}
-
-src_install() {
- cmake_src_install
- pushd src/python_scripts
- distutils-r1_src_install
- popd
- cd "${D}"
- rm usr/bin/mpeg_encode
-}
diff --git a/sci-biology/afni/afni-24.0.08-r2.ebuild
b/sci-biology/afni/afni-24.0.08-r2.ebuild
deleted file mode 100644
index 270100c0b..000000000
--- a/sci-biology/afni/afni-24.0.08-r2.ebuild
+++ /dev/null
@@ -1,124 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-PYTHON_COMPAT=( python3_{10..13} )
-
-DISTUTILS_USE_PEP517=setuptools
-inherit cmake distutils-r1 toolchain-funcs
-
-GTS_HASH="962155a01f5a1b87bd64e3e3d880b4dbc2347ac7"
-NIFTI_HASH="da476fd27f46098f37f5c9c4c1baee01e559572c"
-GIFTI_HASH="d3e873d8539d9b469daf7db04093da1d7e73d4f7"
-
-DESCRIPTION="Analysis of Functional Neuroimages by NIMH"
-HOMEPAGE="https://afni.nimh.nih.gov/pub/dist/doc/htmldoc/";
-SRC_URI="
- https://github.com/afni/afni/archive/refs/tags/AFNI_${PV}.tar.gz ->
${P}.gh.tar.gz
-
https://github.com/NIFTI-Imaging/nifti_clib/archive/${NIFTI_HASH}.tar.gz ->
nifti-${NIFTI_HASH}.tar.gz
-
https://github.com/NIFTI-Imaging/gifti_clib/archive/${GIFTI_HASH}.tar.gz ->
gifti-${GIFTI_HASH}.tar.gz
- "
-
-S="${WORKDIR}/afni-AFNI_${PV}"
-
-LICENSE="GPL-3+"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="test whirlgif"
-RESTRICT="!test? ( test )"
-
-RDEPEND="
- dev-build/ninja
- dev-libs/expat
- dev-libs/glib:2
- dev-libs/libf2c
- media-libs/freeglut
- media-libs/glu
- media-libs/netpbm
- media-libs/qhull
- media-video/mpeg-tools
- sci-biology/afni-datasets
- sci-libs/gsl
- sci-libs/gts
- sys-devel/llvm:*
- sys-libs/libomp
- virtual/jpeg-compat:62
- x11-libs/libGLw
- x11-libs/libXft
- x11-libs/libXi
- x11-libs/libXmu
- x11-libs/libXpm
- x11-libs/libXt
- x11-libs/motif[-static-libs]
- "
-DEPEND="
- ${RDEPEND}
- app-shells/tcsh
- "
-# Prospectively:
-#Update jpeg-compat to virtual/jpeg:0
-# look for xmhtlm
-
- #tar xf "${DISTDIR}/${GTS_HASH}.tar.gz" || die
-src_prepare() {
- tar xf "${DISTDIR}/nifti-${NIFTI_HASH}.tar.gz" || die
- tar xf "${DISTDIR}/gifti-${GIFTI_HASH}.tar.gz" || die
- cmake_src_prepare
- default
- }
-
-src_configure() {
- if use !whirlgif; then
- eapply "${FILESDIR}/${PN}-24.0.04-whirlgif.patch"
- fi
- export CFLAGS="-pthread ${CFLAGS}"
- export GIT_REPO_VERSION=3.0.1.1
- local mycmakeargs=(
- -DLIBDIR=/usr/$(get_libdir)
- -DNIFTI_INSTALL_LIBRARY_DIR=/usr/$(get_libdir)
- -DGIFTI_INSTALL_LIBRARY_DIR=/usr/$(get_libdir)
- -DGIFTI_INSTALL_LIB_DIR=/usr/$(get_libdir)
- -DAFNI_INSTALL_LIBRARY_DIR=/usr/$(get_libdir)
- -DCMAKE_INSTALL_LIBDIR=/usr/$(get_libdir)
- -DCOMP_COREBINARIES=ON
- -DUSE_SYSTEM_NIFTI=OFF
- -DUSE_SYSTEM_GIFTI=OFF
- -DUSE_SYSTEM_XMHTML=OFF
- -DUSE_SYSTEM_GTS=ON
-
-DFETCHCONTENT_SOURCE_DIR_NIFTI_CLIB="${WORKDIR}/nifti_clib-${NIFTI_HASH}"
-
-DFETCHCONTENT_SOURCE_DIR_GIFTI_CLIB="${WORKDIR}/gifti_clib-${GIFTI_HASH}"
- -DCOMP_GUI=ON
- -DCOMP_PLUGINS=ON
- -DUSE_OMP=ON
- -DCOMP_PYTHON=OFF
- -DUSE_SYSTEM_F2C=ON
- )
- tc-export CC
- cmake_src_configure
-}
-
-src_compile() {
- cmake_src_compile
- pushd src/python_scripts
- distutils-r1_src_compile
- popd
-}
-
-src_install() {
- cmake_src_install
- pushd src/python_scripts
- distutils-r1_src_install
- popd
- cd "${D}"
- rm usr/bin/mpeg_encode
- doenvd "${FILESDIR}/97afni"
-}
-
-pkg_postinst() {
- echo
- einfo "Please run the following commands if you"
- einfo "intend to use afni binaries from an existing shell:"
- einfo "source /etc/profile"
- echo
-}
