commit: 85deb6c116f4a6bf49da243324d4cf0b60ff7b8a Author: Paul Zander <negril.nx+gentoo <AT> gmail <DOT> com> AuthorDate: Sat Mar 16 18:12:53 2024 +0000 Commit: Sam James <sam <AT> gentoo <DOT> org> CommitDate: Tue Apr 2 11:26:43 2024 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=85deb6c1
sci-libs/netcdf: cmake rework, fix bug 886155 Remove cmake automagic for file filters. Make test run in parallel that failed due to mpi failures. Filter cmake targets file further. Closes: https://bugs.gentoo.org/886155 Signed-off-by: Paul Zander <negril.nx+gentoo <AT> gmail.com> Closes: https://github.com/gentoo/gentoo/pull/35786 Signed-off-by: Sam James <sam <AT> gentoo.org> sci-libs/netcdf/metadata.xml | 3 +- sci-libs/netcdf/netcdf-4.9.2-r1.ebuild | 103 +++++++++++++++++++++++++++++++++ 2 files changed, 105 insertions(+), 1 deletion(-) diff --git a/sci-libs/netcdf/metadata.xml b/sci-libs/netcdf/metadata.xml index 710afdc8ff08..dec0009bbcb4 100644 --- a/sci-libs/netcdf/metadata.xml +++ b/sci-libs/netcdf/metadata.xml @@ -14,8 +14,9 @@ access, and sharing of scientific data. </longdescription> <use> + <flag name="blosc">Allow using blosc compression via <pkg>dev-libs/c-blosc</pkg></flag> <flag name="dap">Support for remote data access with the built-in OPeNDAP client</flag> - <flag name="hdf">Add support for the Hierarchical Data Format v.4 <pkg>sci-libs/hdf</pkg></flag> + <flag name="hdf">Build with HDF4 read capability(<pkg>sci-libs/hdf</pkg>, <pkg>sci-libs/hdf5</pkg> and <pkg>sys-libs/zlib</pkg> required).</flag> </use> <upstream> <remote-id type="github">Unidata/netcdf-c</remote-id> diff --git a/sci-libs/netcdf/netcdf-4.9.2-r1.ebuild b/sci-libs/netcdf/netcdf-4.9.2-r1.ebuild new file mode 100644 index 000000000000..458001188497 --- /dev/null +++ b/sci-libs/netcdf/netcdf-4.9.2-r1.ebuild @@ -0,0 +1,103 @@ +# Copyright 1999-2024 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +inherit cmake + +DESCRIPTION="Scientific library and interface for array oriented data access" +HOMEPAGE="https://www.unidata.ucar.edu/software/netcdf/"; +SRC_URI="https://downloads.unidata.ucar.edu/netcdf-c/${PV}/${PN}-c-${PV}.tar.gz"; +S="${WORKDIR}"/${PN}-c-${PV} + +LICENSE="UCAR-Unidata" +# SONAME of libnetcdf.so +SLOT="0/19" +KEYWORDS="~amd64 ~arm ~arm64 ~ia64 ~ppc ~ppc64 -riscv ~x86 ~amd64-linux ~x86-linux" +IUSE="blosc bzip2 +dap doc examples hdf +hdf5 mpi szip test zstd" +RESTRICT="!test? ( test )" + +# NOTE OPTION(ENABLE_HDF4 "Build netCDF-4 with HDF4 read capability(HDF4, HDF5 and Zlib required)." OFF) +RDEPEND=" + dev-libs/libxml2:= + sys-libs/zlib:= + blosc? ( dev-libs/c-blosc:= ) + bzip2? ( app-arch/bzip2:= ) + dap? ( net-misc/curl:= ) + hdf? ( + media-libs/libjpeg-turbo:= + sci-libs/hdf:= + sci-libs/hdf5:= + ) + hdf5? ( sci-libs/hdf5:=[hl(+),mpi=,szip=,zlib] ) + zstd? ( app-arch/zstd:= ) +" + +# deflate blosc zstd bz2 +DEPEND="${RDEPEND}" +BDEPEND=" + virtual/pkgconfig + doc? ( app-text/doxygen[dot] ) +" + +REQUIRED_USE=" + szip? ( hdf5 ) + mpi? ( hdf5 ) +" + +PATCHES=( + "${FILESDIR}"/${PN}-4.7.4-big-endian-test.patch +) + +src_configure() { + use mpi && export CC=mpicc + + local mycmakeargs=( + -DCMAKE_POLICY_DEFAULT_CMP0153="OLD" # exec_program + + -DENABLE_DAP_REMOTE_TESTS=OFF + #-DENABLE_HDF4_FILE_TESTS=OFF + -DENABLE_LIBXML2=ON + + -DBUILD_SHARED_LIBS="yes" + -DBUILD_TESTING="$(usex test)" + -DBUILD_UTILITIES="yes" + + -DENABLE_DAP="$(usex dap)" + -DENABLE_DAP2="$(usex dap)" + -DENABLE_DAP4="$(usex dap)" + + -DENABLE_DOXYGEN="$(usex doc)" + -DENABLE_EXAMPLES="$(usex examples)" + -DENABLE_HDF4="$(usex hdf)" + -DENABLE_NETCDF_4="$(usex hdf5)" + -DENABLE_TESTS="$(usex test)" + + -DENABLE_NCZARR="yes" + # NOTE set these via MYCMAKEARGS if need be + # -DENABLE_NCZARR_FILTERS="yes" + # -DENABLE_NCZARR_FILTER_TESTING="yes" + # -DENABLE_NCZARR_ZIP="yes" + + -DCMAKE_DISABLE_FIND_PACKAGE_Blosc="$(usex !blosc)" + -DCMAKE_DISABLE_FIND_PACKAGE_Bz2="$(usex !bzip2)" + -DCMAKE_DISABLE_FIND_PACKAGE_Szip="$(usex !szip)" + -DCMAKE_DISABLE_FIND_PACKAGE_Zstd="$(usex !zstd)" + ) + + cmake_src_configure +} + +src_test() { + [[ -f "${BUILD_DIR}/nc_test4/run_par_test.sh" ]] && \ + sed -e 's/mpiexec/mpiexec --use-hwthread-cpus/g' -i "${BUILD_DIR}/nc_test4/run_par_test.sh" || die + + cmake_src_test +} + +src_install() { + cmake_src_install + + # bug #827188 + sed -i -re "s:${EPREFIX}/usr/$(get_libdir)/lib(dl|m).(so|a);:\1;:g" "${ED}/usr/$(get_libdir)/cmake/netCDF/netCDFTargets.cmake" || die +}
