commit: f90c619958049fd0417d0a27d42cf521e78bd8a9 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Fri Jan 30 12:46:25 2015 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Fri Jan 30 12:46:25 2015 +0000 URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=f90c6199
version bump Package-Manager: portage-2.2.15 --- sci-biology/scaffold_builder/ChangeLog | 8 +++++++- ...20130403.ebuild => scaffold_builder-20131122.ebuild} | 17 +++++++++-------- 2 files changed, 16 insertions(+), 9 deletions(-) diff --git a/sci-biology/scaffold_builder/ChangeLog b/sci-biology/scaffold_builder/ChangeLog index 1dec7cf..5663f61 100644 --- a/sci-biology/scaffold_builder/ChangeLog +++ b/sci-biology/scaffold_builder/ChangeLog @@ -1,7 +1,13 @@ # ChangeLog for sci-biology/scaffold_builder -# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ +*scaffold_builder-20131122 (30 Jan 2015) + + 30 Jan 2015; Martin Mokrejs <[email protected]> + +scaffold_builder-20131122.ebuild, -scaffold_builder-20130403.ebuild: + version bump + 16 Sep 2014; Christoph Junghans <[email protected]> scaffold_builder-20130403.ebuild: added license diff --git a/sci-biology/scaffold_builder/scaffold_builder-20130403.ebuild b/sci-biology/scaffold_builder/scaffold_builder-20131122.ebuild similarity index 64% rename from sci-biology/scaffold_builder/scaffold_builder-20130403.ebuild rename to sci-biology/scaffold_builder/scaffold_builder-20131122.ebuild index 9a4446d..dc14a4d 100644 --- a/sci-biology/scaffold_builder/scaffold_builder-20130403.ebuild +++ b/sci-biology/scaffold_builder/scaffold_builder-20131122.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2014 Gentoo Foundation +# Copyright 1999-2015 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Header: $ @@ -8,14 +8,14 @@ S="${WORKDIR}" DESCRIPTION="Combine FASTA contigs from a de novo assembly into scaffolds using a reference assembly" HOMEPAGE="http://sourceforge.net/projects/scaffold-b/"; -SRC_URI="http://sourceforge.net/projects/scaffold-b/files/scaffold_builder_v2.py +SRC_URI="http://sourceforge.net/projects/scaffold-b/files/scaffold_builder_v2.1.zip http://sourceforge.net/projects/scaffold-b/files/scaffold_builder_v2_help.doc http://downloads.sourceforge.net/project/scaffold-b/Manual_v2.1.pdf"; #http://www.scfbm.org/content/8/1/23 LICENSE="CC-BY-2.0" SLOT="0" -KEYWORDS="" +KEYWORDS="~amd64" IUSE="" DEPEND="" @@ -23,10 +23,11 @@ RDEPEND="${DEPEND} dev-lang/python" src_install(){ - echo "#! /usr/bin/env python" > scaffold_builder_v2.py || die - cat "${DISTDIR}"/scaffold_builder_v2.py >> scaffold_builder_v2.py || die - dobin scaffold_builder_v2.py + echo "#! /usr/bin/env python" > scaffold_builder.pyy || die + cat scaffold_builder.py >> scaffold_builder.pyy || die + mv scaffold_builder.pyy scaffold_builder.py || die + dobin scaffold_builder.py dodoc "${DISTDIR}"/scaffold_builder_v2_help.doc - cp "${DISTDIR}"/Manual_v2.1.pdf scaffold_builder_v2_Manual.pdf || die - dodoc scaffold_builder_v2_Manual.pdf + cp -p "${DISTDIR}"/Manual_v2.1.pdf scaffold_builder.pdf || die + dodoc scaffold_builder.pdf }
