commit: 9ae7b9a12b89ec8fcb4473bd6912343c99f0f260
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Thu Dec 14 19:31:22 2023 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Thu Dec 14 19:31:22 2023 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=9ae7b9a1
dev-python/spikeinterface: add 0.99.1
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
.../spikeinterface/spikeinterface-0.99.1.ebuild | 53 ++++++++++++++++++++++
1 file changed, 53 insertions(+)
diff --git a/dev-python/spikeinterface/spikeinterface-0.99.1.ebuild
b/dev-python/spikeinterface/spikeinterface-0.99.1.ebuild
new file mode 100644
index 000000000..a428775eb
--- /dev/null
+++ b/dev-python/spikeinterface/spikeinterface-0.99.1.ebuild
@@ -0,0 +1,53 @@
+# Copyright 2021-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+PYTHON_COMPAT=( python3_{10..11} )
+DISTUTILS_USE_PEP517=setuptools
+inherit distutils-r1
+
+DESCRIPTION="A Python-based module for creating flexible and robust spike
sorting pipelines."
+HOMEPAGE="https://github.com/SpikeInterface/spikeinterface";
+SRC_URI="https://github.com/SpikeInterface/spikeinterface/archive/refs/tags/${PV}.tar.gz
-> ${P}.tar.gz"
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE="extractors full test"
+# Reported upstream:
+# https://github.com/SpikeInterface/spikeinterface/issues/2339
+RESTRICT="test"
+
+RDEPEND="
+ dev-python/joblib[${PYTHON_USEDEP}]
+ dev-python/neo[${PYTHON_USEDEP}]
+ dev-python/numpy[${PYTHON_USEDEP}]
+ >=dev-python/probeinterface-0.2.16[${PYTHON_USEDEP}]
+ dev-python/threadpoolctl[${PYTHON_USEDEP}]
+ dev-python/tqdm[${PYTHON_USEDEP}]
+ extractors? (
+ dev-python/pynwb[${PYTHON_USEDEP}]
+ dev-python/lxml[${PYTHON_USEDEP}]
+ dev-python/scipy[${PYTHON_USEDEP}]
+ )
+ full? (
+ dev-python/distinctipy[${PYTHON_USEDEP}]
+ dev-python/h5py[${PYTHON_USEDEP}]
+ dev-python/matplotlib[${PYTHON_USEDEP}]
+ dev-python/networkx[${PYTHON_USEDEP}]
+ dev-python/pandas[${PYTHON_USEDEP}]
+ dev-python/scipy[${PYTHON_USEDEP}]
+ dev-python/xarray[${PYTHON_USEDEP}]
+ dev-python/zarr[${PYTHON_USEDEP}]
+ sci-libs/scikit-learn[${PYTHON_USEDEP}]
+ )
+"
+# Also wants:
+# # Extractors:
+# MEArec
+# pyedflib
+# sonpy
+# dev-python/hdf5storage (in ::science, masked)
+
+distutils_enable_tests pytest
