commit: 3839c43e8d39adf0903e21ecb7da3d92efd48646 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Thu Jan 15 13:02:54 2015 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Thu Jan 15 13:02:54 2015 +0000 URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=3839c43e
sci-biology/edena: new package Package-Manager: portage-2.2.7 --- sci-biology/edena/ChangeLog | 9 +++++++++ sci-biology/edena/edena-3.131028.ebuild | 35 +++++++++++++++++++++++++++++++++ sci-biology/edena/metadata.xml | 9 +++++++++ 3 files changed, 53 insertions(+) diff --git a/sci-biology/edena/ChangeLog b/sci-biology/edena/ChangeLog new file mode 100644 index 0000000..a3f0909 --- /dev/null +++ b/sci-biology/edena/ChangeLog @@ -0,0 +1,9 @@ +# ChangeLog for sci-biology/edena +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*edena-3.131028 (15 Jan 2015) + + 15 Jan 2015; Martin Mokrejs <[email protected]> + +edena-3.131028.ebuild, +metadata.xml: + sci-biology/edena: new package diff --git a/sci-biology/edena/edena-3.131028.ebuild b/sci-biology/edena/edena-3.131028.ebuild new file mode 100644 index 0000000..0c4fe10 --- /dev/null +++ b/sci-biology/edena/edena-3.131028.ebuild @@ -0,0 +1,35 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +inherit toolchain-funcs + +DESCRIPTION="De novo short read assembler" +HOMEPAGE="http://www.genomic.ch/edena.php"; +SRC_URI="http://www.genomic.ch/edena/EdenaV"${PV}".tar.gz"; + +LICENSE="GPL-3" +SLOT="0" +KEYWORDS="~amd64" +IUSE="" + +DEPEND="" +RDEPEND="${DEPEND}" + +S="${WORKDIR}"/EdenaV"${PV}" + +src_prepare(){ + sed -e "s@^CCC.*@CCC = $(tc-getCXX)@" -e "s@^CFLAGS.*@CFLAGS = ${CFLAGS} -pthread@" -i src/Makefile || die +} + +src_compile(){ + cd src + emake +} + +src_install(){ + dobin src/edena + dodoc referenceManual.pdf +} diff --git a/sci-biology/edena/metadata.xml b/sci-biology/edena/metadata.xml new file mode 100644 index 0000000..2bc8930 --- /dev/null +++ b/sci-biology/edena/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <herd>sci-biology</herd> + <maintainer> + <email>[email protected]</email> + <name>Martin Mokrejs</name> + </maintainer> +</pkgmetadata>
