commit: 0d09d404b268844e465c95d67083f0cce0d1e1e4 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Thu Jan 15 11:44:16 2015 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Thu Jan 15 11:44:16 2015 +0000 URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=0d09d404
sci-biology/sabre: new package Package-Manager: portage-2.2.7 --- sci-biology/sabre/ChangeLog | 9 +++++++++ sci-biology/sabre/metadata.xml | 9 +++++++++ sci-biology/sabre/sabre-9999.ebuild | 39 +++++++++++++++++++++++++++++++++++++ 3 files changed, 57 insertions(+) diff --git a/sci-biology/sabre/ChangeLog b/sci-biology/sabre/ChangeLog new file mode 100644 index 0000000..f7f747f --- /dev/null +++ b/sci-biology/sabre/ChangeLog @@ -0,0 +1,9 @@ +# ChangeLog for sci-biology/sabre +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*sabre-9999 (15 Jan 2015) + + 15 Jan 2015; Martin Mokrejs <[email protected]> +metadata.xml, + +sabre-9999.ebuild: + sci-biology/sabre: new package diff --git a/sci-biology/sabre/metadata.xml b/sci-biology/sabre/metadata.xml new file mode 100644 index 0000000..2bc8930 --- /dev/null +++ b/sci-biology/sabre/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <herd>sci-biology</herd> + <maintainer> + <email>[email protected]</email> + <name>Martin Mokrejs</name> + </maintainer> +</pkgmetadata> diff --git a/sci-biology/sabre/sabre-9999.ebuild b/sci-biology/sabre/sabre-9999.ebuild new file mode 100644 index 0000000..2aee701 --- /dev/null +++ b/sci-biology/sabre/sabre-9999.ebuild @@ -0,0 +1,39 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +[ "$PV" == "9999" ] && inherit git-2 + +inherit toolchain-funcs + +DESCRIPTION="Barcode demultiplexing and trimming tool for Illumina FastQ files" +HOMEPAGE="https://github.com/najoshi/sabre"; +if [ "$PV" == "9999" ]; then + EGIT_REPO_URI="https://github.com/najoshi/sabre.git"; + KEYWORDS="" +else + SRC_URI="" + KEYWORDS="" +fi + + +LICENSE="MIT" # almost verbatim +SLOT="0" +KEYWORDS="" +IUSE="" + +DEPEND="sys-libs/zlib" +RDEPEND="${DEPEND}" + +S="${S}"/src + +src_prepare(){ + sed -e "s#OPT = -O3#OPT = ${CFLAGS}#" \ + -e "s#CC = gcc#CC = $(tc-getCC)#" -i Makefile || die +} + +src_install(){ + dobin sabre +}
