commit: 495d85d8aa9c330e890dfd0102af62b2c3cbf3bf Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Wed Jan 7 21:45:36 2015 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Wed Jan 7 21:45:36 2015 +0000 URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=495d85d8
dropped KEYWORDS for incomplete ebuild --- sci-biology/ePCR/ePCR-2.3.12.ebuild | 34 ++++++++++++++++++++++++++++++++++ sci-biology/ePCR/files/config.mk.patch | 18 ++++++++++++++++++ sci-biology/ePCR/metadata.xml | 9 +++++++++ 3 files changed, 61 insertions(+) diff --git a/sci-biology/ePCR/ePCR-2.3.12.ebuild b/sci-biology/ePCR/ePCR-2.3.12.ebuild new file mode 100644 index 0000000..bb82fa3 --- /dev/null +++ b/sci-biology/ePCR/ePCR-2.3.12.ebuild @@ -0,0 +1,34 @@ +# Copyright 1999-2012 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=3 + +inherit eutils + +DESCRIPTION="Search for sub-sequences matching PCR primers with correct order, orientation, and spacing" +HOMEPAGE="http://www.ncbi.nlm.nih.gov/projects/e-pcr/"; +SRC_URI="ftp://ftp.ncbi.nlm.nih.gov/pub/schuler/e-PCR/e-PCR-"${PV}"-src.tar.gz"; + +LICENSE="" +SLOT="0" +KEYWORDS="" +IUSE="" + +DEPEND="" +RDEPEND="${DEPEND}" + +S=${WORKDIR}"/e-PCR-"${PV} + +src_prepare(){ + epatch ${FILESDIR}"/config.mk.patch" +} + +src_compile(){ + make -j1 srcdir=${S} objdir=${S} || die "make -j1 failed" +} + +src_install(){ + dobin e-PCR famap fahash re-PCR + dodoc README.TXT +} diff --git a/sci-biology/ePCR/files/config.mk.patch b/sci-biology/ePCR/files/config.mk.patch new file mode 100644 index 0000000..1960b43 --- /dev/null +++ b/sci-biology/ePCR/files/config.mk.patch @@ -0,0 +1,18 @@ +--- stand/config.mk.ori 2012-01-16 17:38:11.000000000 +0100 ++++ stand/config.mk 2012-01-16 17:39:12.000000000 +0100 +@@ -52,11 +52,11 @@ + + ######################################################################### + # GNU compiler flags +-CC = gcc +-CXX = g++ +-CXXFLAGS = -I$(srcdir) -I$(INCDIR) $(CC_FLAGS) $(PART_CXXFLAGS) \ ++#CC = gcc ++#CXX = g++ ++CXXFLAGS = -I$(srcdir) -I$(INCDIR) -I`pwd` \ + -DDEALLOCATE=0 $(LF64CCFLAGS) $(VERSION_FLAGS) -DSTANDALONE=1 +-LDFLAGS = $(LD_FLAGS) $(LF64LDFLAGS) -L$(tgtdir) -L$(LIBDIR) $(PART_LDFLAGS) ++LDFLAGS = $(LF64LDFLAGS) -L$(tgtdir) -L$(LIBDIR) + # $(PART_PRELIBS) $(LIBS:%=-l%) $(PART_POSTLIBS) + + LF64CCFLAGS = `getconf LFS_CFLAGS` diff --git a/sci-biology/ePCR/metadata.xml b/sci-biology/ePCR/metadata.xml new file mode 100644 index 0000000..2bc8930 --- /dev/null +++ b/sci-biology/ePCR/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <herd>sci-biology</herd> + <maintainer> + <email>[email protected]</email> + <name>Martin Mokrejs</name> + </maintainer> +</pkgmetadata>
