commit: 1a11e439862e745518e3ac576cfc67dc6f110331 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Wed Jan 7 21:43:37 2015 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Wed Jan 7 21:43:37 2015 +0000 URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=1a11e439
updated checksum types --- sci-biology/est2assembly/est2assembly-1.08.ebuild | 26 +++++++++++++ sci-biology/est2assembly/est2assembly-9999.ebuild | 47 +++++++++++++++++++++++ 2 files changed, 73 insertions(+) diff --git a/sci-biology/est2assembly/est2assembly-1.08.ebuild b/sci-biology/est2assembly/est2assembly-1.08.ebuild new file mode 100644 index 0000000..72fcd5d --- /dev/null +++ b/sci-biology/est2assembly/est2assembly-1.08.ebuild @@ -0,0 +1,26 @@ +# Copyright 1999-2011 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=3 + +DESCRIPTION="EST assembly and annotation pipeline for chado/gbrowse2 display" +HOMEPAGE="http://code.google.com/p/est2assembly/"; +SRC_URI="http://est2assembly.googlecode.com/files/est2assembly_1.08.tar.gz"; + +LICENSE="GPL-v3" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" + +DEPEND="dev-lang/perl + app-portage/g-cpan + perl-gcpan/Time-Progress + sci-biology/fasta + sci-biology/ssaha2 + sci-biology/mira + sci-biology/emboss + sci-biology/bioperl + app-arch/pbzip2" +RDEPEND="${DEPEND}" + diff --git a/sci-biology/est2assembly/est2assembly-9999.ebuild b/sci-biology/est2assembly/est2assembly-9999.ebuild new file mode 100644 index 0000000..11284c5 --- /dev/null +++ b/sci-biology/est2assembly/est2assembly-9999.ebuild @@ -0,0 +1,47 @@ +# Copyright 1999-2014 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +PYTHON_COMPAT=( python{2_6,2_7} ) + +inherit eutils distutils-r1 + +[ "$PV" == "9999" ] && inherit subversion + +DESCRIPTION="EST assembly and annotation pipeline for chado/gbrowse2 display" +HOMEPAGE="http://code.google.com/p/est2assembly/"; +ESVN_REPO_URI="http://est2assembly.googlecode.com/svn/trunk"; + +if [ "$PV" == "9999" ]; then + ESVN_REPO_URI="http://est2assembly.googlecode.com/svn/trunk"; + KEYWORDS="~amd64 ~x86" +else + SRC_URI="http://est2assembly.googlecode.com/files/est2assembly_"${PV}".tar.gz"; + KEYWORDS="~amd64 ~x86" +fi + +LICENSE="GPL-3" +SLOT="0" +IUSE="" + +# still missing +# annot8r http://nematodes.org/bioinformatics/annot8r/index.shtml and http://nematodes.org/bioinformatics/Annot8r_physprop/ +# prot4EST http://nematodes.org/bioinformatics/prot4EST/ + +DEPEND="dev-lang/perl + dev-perl/Time-Progress + sci-biology/fasta + sci-biology/ssaha2-bin + sci-biology/mira + sci-biology/emboss + sci-biology/bioperl + app-arch/pbzip2" +RDEPEND="${DEPEND}" + +# more install tricks in "${S}"/install.pl + +pkg_postinst(){ + einfo "The package uses mira and newbler assemblers" +}
