commit: 5a899bba55649b682d4f3b3ebba06734fb7401e5
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Mon May 22 10:49:14 2023 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Mon May 22 10:49:14 2023 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=5a899bba
sci-biology/gemini: treeclean
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
sci-biology/gemini/gemini-0.30.2.ebuild | 45 ---------------------------------
sci-biology/gemini/metadata.xml | 15 -----------
2 files changed, 60 deletions(-)
diff --git a/sci-biology/gemini/gemini-0.30.2.ebuild
b/sci-biology/gemini/gemini-0.30.2.ebuild
deleted file mode 100644
index 25ec22946..000000000
--- a/sci-biology/gemini/gemini-0.30.2.ebuild
+++ /dev/null
@@ -1,45 +0,0 @@
-# Copyright 1999-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-PYTHON_COMPAT=( python3_{10..10} )
-
-inherit distutils-r1
-
-DESCRIPTION="Lightweight VCF to DB framework for disease and population
genetics"
-HOMEPAGE="https://github.com/arq5x/gemini
- http://gemini.readthedocs.org/en/latest";
-SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-
-RDEPEND="
- dev-python/bottle[${PYTHON_USEDEP}]
- dev-python/cython[${PYTHON_USEDEP}]
- dev-python/ipyparallel[${PYTHON_USEDEP}]
- dev-python/jinja[${PYTHON_USEDEP}]
- dev-python/networkx[${PYTHON_USEDEP}]
- dev-python/numpy[${PYTHON_USEDEP}]
- dev-python/numexpr[${PYTHON_USEDEP}]
- dev-python/openpyxl[${PYTHON_USEDEP}]
- dev-python/pandas[${PYTHON_USEDEP}]
- dev-python/pyyaml[${PYTHON_USEDEP}]
- dev-python/unidecode[${PYTHON_USEDEP}]
- dev-python/sqlalchemy[${PYTHON_USEDEP}]
- sci-biology/bx-python[${PYTHON_USEDEP}]
- sci-libs/htslib
- sci-biology/pybedtools[${PYTHON_USEDEP}]
- sci-biology/pysam[${PYTHON_USEDEP}]
-"
-
-distutils_enable_sphinx docs
-
-python_prepare_all() {
- # this has been renamed in newer versions of sphinx
- sed -i -e 's/sphinx.ext.pngmath/sphinx.ext.imgmath/g' docs/conf.py ||
die
-
- distutils-r1_python_prepare_all
-}
diff --git a/sci-biology/gemini/metadata.xml b/sci-biology/gemini/metadata.xml
deleted file mode 100644
index 260a8b4ae..000000000
--- a/sci-biology/gemini/metadata.xml
+++ /dev/null
@@ -1,15 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";>
-<pkgmetadata>
- <maintainer type="person">
- <email>[email protected]</email>
- <name>Martin Mokrejs</name>
- </maintainer>
- <maintainer type="project">
- <email>[email protected]</email>
- <name>Gentoo Biology Project</name>
- </maintainer>
- <upstream>
- <remote-id type="github">arq5x/gemini</remote-id>
- </upstream>
-</pkgmetadata>
