commit: 5ea2483a3e1f329d32d540e515f8d326573b9c45 Author: Horea Christian <chr <AT> chymera <DOT> eu> AuthorDate: Sun May 14 04:19:39 2023 +0000 Commit: Horea Christian <horea.christ <AT> gmail <DOT> com> CommitDate: Sun May 14 04:19:44 2023 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=5ea2483a
sci-biology/rtg-tools: treeclean dev-java/jython dependency has been removed by e4d717fb45ff9bf0ae328dccee5dd761630c3436 on ::gentoo :( Signed-off-by: Horea Christian <chr <AT> chymera.eu> sci-biology/rtg-tools/metadata.xml | 15 ------- sci-biology/rtg-tools/rtg-tools-3.12.ebuild | 63 ----------------------------- 2 files changed, 78 deletions(-) diff --git a/sci-biology/rtg-tools/metadata.xml b/sci-biology/rtg-tools/metadata.xml deleted file mode 100644 index 026053b60..000000000 --- a/sci-biology/rtg-tools/metadata.xml +++ /dev/null @@ -1,15 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> -<pkgmetadata> - <maintainer type="person"> - <email>[email protected]</email> - <name>Martin Mokrejs</name> - </maintainer> - <maintainer type="project"> - <email>[email protected]</email> - <name>Gentoo Biology Project</name> - </maintainer> - <upstream> - <remote-id type="github">RealTimeGenomics/rtg-tools</remote-id> - </upstream> -</pkgmetadata> diff --git a/sci-biology/rtg-tools/rtg-tools-3.12.ebuild b/sci-biology/rtg-tools/rtg-tools-3.12.ebuild deleted file mode 100644 index a07f55539..000000000 --- a/sci-biology/rtg-tools/rtg-tools-3.12.ebuild +++ /dev/null @@ -1,63 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -inherit java-pkg-2 java-ant-2 - -DESCRIPTION="Manipulate and analyze VCF files" -HOMEPAGE="https://github.com/RealTimeGenomics/rtg-tools"; -SRC_URI="https://github.com/RealTimeGenomics/rtg-tools/archive/${PV}.tar.gz -> ${P}.tar.gz" - -LICENSE="BSD-2" -SLOT="0" -KEYWORDS="~amd64" - -DEPEND=" - >=virtual/jdk-1.8:* - >=dev-java/ant-core-1.9 - dev-java/jython" -RDEPEND="${DEPEND} - >=virtual/jre-1.8:*" - -src_compile(){ - ant zip-nojre || die -} - -# "${S}"/lib/sam-2.9.1.jar -# "${S}"/lib/findbugs-annotations.jar -# "${S}"/lib/findbugs-jsr305.jar -# "${S}"/lib/velocity-tools-generic.jar -# "${S}"/lib/RPlot.jar -# "${S}"/lib/commons-collections-3.2.1.jar -# "${S}"/lib/velocity-1.7.jar -# "${S}"/lib/commons-compress-1.4.1.jar -# "${S}"/lib/commons-lang-2.4.jar -# "${S}"/lib/jumble-annotations.jar -# "${S}"/lib/sam-2.9.1-src.jar -# "${S}"/lib/gzipfix.jar -# "${S}"/buildLib/ant-contrib-1.0b3.jar -# "${S}"/buildLib/handlechecker.jar -# "${S}"/testLib/hamcrest-core-1.3.jar -# "${S}"/testLib/junit.jar -# "${S}"/testLib/spelling.jar - -src_install(){ - dobin installer/rtg - insinto /usr/share/"${PN}" - doins build/rtg-tools.jar - doins lib/gzipfix.jar - dodoc installer/resources/tools/RTGOperationsManual.pdf - doins -r installer/resources/tools/RTGOperationsManual - dodoc installer/resources/tools/scripts/README.txt - dodoc installer/ReleaseNotes.txt - # TODO - # extract more files from the generated rtg-tools-3.11-39691f9f-base.zip - # file or better the installer/resources/ source directory - # - # install installer/resources/common/scripts/rtg-bash-completion -} - -src_test(){ - ant runalltests || die -}
