commit: 30a7dd01d0de685f5785c33971269754801eb3b8 Author: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org> AuthorDate: Tue May 2 12:27:17 2023 +0000 Commit: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org> CommitDate: Tue May 2 12:27:17 2023 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=30a7dd01
sci-biology/prokka: treeclean Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org> sci-biology/prokka/metadata.xml | 15 -------------- sci-biology/prokka/prokka-1.14.6.ebuild | 36 --------------------------------- 2 files changed, 51 deletions(-) diff --git a/sci-biology/prokka/metadata.xml b/sci-biology/prokka/metadata.xml deleted file mode 100644 index 9272f0d9c..000000000 --- a/sci-biology/prokka/metadata.xml +++ /dev/null @@ -1,15 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> -<pkgmetadata> - <maintainer type="person"> - <email>[email protected]</email> - <name>Martin Mokrejs</name> - </maintainer> - <maintainer type="project"> - <email>[email protected]</email> - <name>Gentoo Biology Project</name> - </maintainer> - <upstream> - <remote-id type="github">tseemann/prokka</remote-id> - </upstream> -</pkgmetadata> diff --git a/sci-biology/prokka/prokka-1.14.6.ebuild b/sci-biology/prokka/prokka-1.14.6.ebuild deleted file mode 100644 index b56fd143f..000000000 --- a/sci-biology/prokka/prokka-1.14.6.ebuild +++ /dev/null @@ -1,36 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -DESCRIPTION="Prokaryotic whole genome annotation pipeline" -HOMEPAGE="https://vicbioinformatics.com/software.prokka.shtml"; -SRC_URI="https://github.com/tseemann/prokka/archive/v${PV}.tar.gz -> ${P}.tar.gz" - -LICENSE="GPL-2" -SLOT="0" -KEYWORDS="~amd64" - -RDEPEND=" - sys-process/parallel - sci-biology/bioperl - sci-biology/prodigal - || ( sci-biology/ncbi-tools++ sci-biology/ncbi-blast+ ) - sci-biology/hmmer:* - sci-biology/infernal - sci-biology/exonerate - sci-biology/barrnap" -DEPEND="${RDEPEND}" -# sci-biology/minced -# >=sci-biolohy/hmmer-3.1 -# Aragorn -# >=RNAmmer-1.2 -# >=HMMmmer-2.0 (that is not sci-biology/hmmer) -# SignalP >= 3.0 -# sequin -# tbl2asn >= 23.0 from wget --mirror -nH -nd ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools/converters/by_program/tbl2asn/linux64.tbl2asn.gz - -src_install() { - default - dobin bin/prokka -}
