commit: 2063f30830d744d566cddc2c454ec70e5600dae7
Author: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
AuthorDate: Tue May 2 12:25:02 2023 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Tue May 2 12:25:02 2023 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=2063f308
sci-biology/gffutils: drop 0.10.1
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>
sci-biology/gffutils/gffutils-0.10.1.ebuild | 42 -----------------------------
1 file changed, 42 deletions(-)
diff --git a/sci-biology/gffutils/gffutils-0.10.1.ebuild
b/sci-biology/gffutils/gffutils-0.10.1.ebuild
deleted file mode 100644
index 96bceed2f..000000000
--- a/sci-biology/gffutils/gffutils-0.10.1.ebuild
+++ /dev/null
@@ -1,42 +0,0 @@
-# Copyright 1999-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-PYTHON_COMPAT=( python3_{10..11} )
-
-inherit distutils-r1
-
-DESCRIPTION="GFF and GTF file manipulation and interconversion"
-HOMEPAGE="https://gffutils.readthedocs.io/en/latest/";
-SRC_URI="https://github.com/daler/gffutils/archive/v${PV}.tar.gz ->
${P}.tar.gz"
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="test"
-# Nose tests no longer supported
-RESTRICT="test"
-
-RDEPEND="
- dev-python/simplejson[${PYTHON_USEDEP}]
- dev-python/argh[${PYTHON_USEDEP}]
- dev-python/argcomplete[${PYTHON_USEDEP}]
- sci-biology/biopython[${PYTHON_USEDEP}]
- sci-biology/pybedtools[${PYTHON_USEDEP}]
- sci-biology/pyfaidx[${PYTHON_USEDEP}]
-"
-DEPEND="${RDEPEND}"
-
-python_prepare_all() {
- if use test; then
- sed -i -e "s:/tmp/gffutils-test:${T}:g" gffutils/test/test.py
|| die
- fi
- distutils-r1_python_prepare_all
-}
-
-distutils_enable_tests nose
-python_test() {
- distutils_install_for_testing
- nosetests -v -x --with-doctest -a '!slow' || die
-}
