commit: 7f9384c065b99e3a858415a8a838438d9f70bcdf
Author: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
AuthorDate: Tue May 2 12:08:24 2023 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Tue May 2 12:15:10 2023 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=7f9384c0
sci-biology/khmer: treeclean
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>
sci-biology/khmer/khmer-2.1.1.ebuild | 34 ----------------------------------
sci-biology/khmer/metadata.xml | 16 ----------------
2 files changed, 50 deletions(-)
diff --git a/sci-biology/khmer/khmer-2.1.1.ebuild
b/sci-biology/khmer/khmer-2.1.1.ebuild
deleted file mode 100644
index 11c4231e8..000000000
--- a/sci-biology/khmer/khmer-2.1.1.ebuild
+++ /dev/null
@@ -1,34 +0,0 @@
-# Copyright 1999-2020 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-PYTHON_COMPAT=( python3_{7,8,9} )
-
-inherit distutils-r1
-
-DESCRIPTION="In-memory K-mer counting in DNA/RNA/protein sequences"
-HOMEPAGE="https://github.com/dib-lab/khmer";
-SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
-
-LICENSE="BSD"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-
-# ToDo: Fix this:
-# ModuleNotFoundError: No module named 'khmer._khmer'
-# even happens with --install option for enable_tests
-RESTRICT="test"
-
-RDEPEND="
- sci-biology/screed[${PYTHON_USEDEP}]
- dev-python/bz2file[${PYTHON_USEDEP}]
-"
-
-distutils_enable_tests pytest
-
-python_prepare_all() {
- # do not depend on pytest-runner
- sed -i "/pytest-runner/d" setup.py || die
- distutils-r1_python_prepare_all
-}
diff --git a/sci-biology/khmer/metadata.xml b/sci-biology/khmer/metadata.xml
deleted file mode 100644
index 91ed395d8..000000000
--- a/sci-biology/khmer/metadata.xml
+++ /dev/null
@@ -1,16 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";>
-<pkgmetadata>
- <maintainer type="person">
- <email>[email protected]</email>
- <name>Martin Mokrejs</name>
- </maintainer>
- <maintainer type="project">
- <email>[email protected]</email>
- <name>Gentoo Biology Project</name>
- </maintainer>
- <upstream>
- <remote-id type="github">ged-lab/khmer</remote-id>
- <remote-id type="pypi">khmer</remote-id>
- </upstream>
-</pkgmetadata>
