commit: a020e3fc5daa38926c05fedc5d4de784f26cc172 Author: Horea Christian <chr <AT> chymera <DOT> eu> AuthorDate: Tue Jan 31 09:53:02 2023 +0000 Commit: Horea Christian <horea.christ <AT> gmail <DOT> com> CommitDate: Tue Jan 31 09:53:02 2023 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=a020e3fc
dev-python/neo: new package, add 0.11.0, 0.11.1 Signed-off-by: Horea Christian <chr <AT> chymera.eu> dev-python/neo/metadata.xml | 23 +++++++++++++++ dev-python/neo/neo-0.11.0.ebuild | 62 ++++++++++++++++++++++++++++++++++++++++ dev-python/neo/neo-0.11.1.ebuild | 55 +++++++++++++++++++++++++++++++++++ 3 files changed, 140 insertions(+) diff --git a/dev-python/neo/metadata.xml b/dev-python/neo/metadata.xml new file mode 100644 index 000000000..5a50da2a7 --- /dev/null +++ b/dev-python/neo/metadata.xml @@ -0,0 +1,23 @@ +<?xml version='1.0' encoding='UTF-8'?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <maintainer type="person"> + <email>[email protected]</email> + <name>Horea Christian</name> + </maintainer> + <maintainer type="project"> + <email>[email protected]</email> + <name>Gentoo Science Project</name> + </maintainer> + <longdescription lang="en"> + Neo is a Python package for working with electrophysiology data in Python, + together with support for reading a wide range of neurophysiology file + formats, including Spike2, NeuroExplorer, AlphaOmega, Axon, Blackrock, + Plexon, Tdt, and support for writing to a subset of these formats plus + non-proprietary formats including HDF5. + </longdescription> + <upstream> + <remote-id type="github">NeuralEnsemble/python-neo</remote-id> + <remote-id type="pypi">neo</remote-id> + </upstream> +</pkgmetadata> diff --git a/dev-python/neo/neo-0.11.0.ebuild b/dev-python/neo/neo-0.11.0.ebuild new file mode 100644 index 000000000..c66b2b951 --- /dev/null +++ b/dev-python/neo/neo-0.11.0.ebuild @@ -0,0 +1,62 @@ +# Copyright 2021-2023 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +PYTHON_COMPAT=( python3_{10..10} ) +DISTUTILS_USE_PEP517=setuptools +inherit distutils-r1 + +MY_PN="python-neo" + +DESCRIPTION="Read and represent a wide range of neurophysiology file formats in Python" +HOMEPAGE="https://github.com/NeuralEnsemble/python-neo"; +SRC_URI="https://github.com/NeuralEnsemble/python-neo/archive/refs/tags/${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="MIT" +SLOT="0" +KEYWORDS="~amd64" +IUSE="test" + +RDEPEND=" + dev-python/numpy[${PYTHON_USEDEP}] + dev-python/quantities[${PYTHON_USEDEP}] +" +BDEPEND=" + test? ( + ${RDEPEND} + dev-python/scipy[${PYTHON_USEDEP}] + dev-python/h5py[${PYTHON_USEDEP}] + dev-python/matplotlib[${PYTHON_USEDEP}] + dev-python/pillow[${PYTHON_USEDEP}] + dev-python/probeinterface[${PYTHON_USEDEP}] + dev-python/pynwb[${PYTHON_USEDEP}] + dev-python/tqdm[${PYTHON_USEDEP}] + dev-vcs/datalad[${PYTHON_USEDEP}] + ) +" +# Testing deps also need: +# igor +# pyedflib https://github.com/holgern/pyedflib +# klusta +# nixio +# sonpy +# ipython + +S="${WORKDIR}/${MY_PN}-${PV}" + +distutils_enable_tests pytest + +EPYTEST_DESELECT=( + neo/test/utils/test_datasets.py::TestDownloadDataset::test_download_dataset +) + +# Reported upstream +# https://github.com/NeuralEnsemble/python-neo/issues/1037 +python_test() { + local EPYTEST_IGNORE=( + neo/test/iotest/* + neo/test/rawiotest/* + ) + epytest +} diff --git a/dev-python/neo/neo-0.11.1.ebuild b/dev-python/neo/neo-0.11.1.ebuild new file mode 100644 index 000000000..c7a36d0e3 --- /dev/null +++ b/dev-python/neo/neo-0.11.1.ebuild @@ -0,0 +1,55 @@ +# Copyright 2021-2023 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +PYTHON_COMPAT=( python3_{10..10} ) +DISTUTILS_USE_PEP517=setuptools +inherit distutils-r1 + +DESCRIPTION="Read and represent a wide range of neurophysiology file formats in Python" +HOMEPAGE="https://github.com/NeuralEnsemble/python-neo"; +SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz" +#SRC_URI="https://github.com/NeuralEnsemble/python-neo/archive/refs/tags/${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="MIT" +SLOT="0" +KEYWORDS="~amd64" +IUSE="test" + +RDEPEND=" + dev-python/numpy[${PYTHON_USEDEP}] + dev-python/quantities[${PYTHON_USEDEP}] +" +BDEPEND=" + test? ( + ${RDEPEND} + dev-python/scipy[${PYTHON_USEDEP}] + dev-python/h5py[${PYTHON_USEDEP}] + dev-python/matplotlib[${PYTHON_USEDEP}] + dev-python/pillow[${PYTHON_USEDEP}] + dev-python/probeinterface[${PYTHON_USEDEP}] + dev-python/pynwb[${PYTHON_USEDEP}] + dev-python/tqdm[${PYTHON_USEDEP}] + dev-vcs/datalad[${PYTHON_USEDEP}] + ) +" +# Testing deps also need: +# igor +# pyedflib https://github.com/holgern/pyedflib +# klusta +# nixio +# sonpy +# ipython + +distutils_enable_tests pytest + +# Reported upstream +# https://github.com/NeuralEnsemble/python-neo/issues/1037 +python_test() { + local EPYTEST_IGNORE=( + neo/test/iotest/* + neo/test/rawiotest/* + ) + epytest +}
