commit: c668644af20efeb1bcf9db67d2cda872ff55753d Author: David Seifert <soap <AT> gentoo <DOT> org> AuthorDate: Thu Jul 7 19:56:59 2022 +0000 Commit: David Seifert <soap <AT> gentoo <DOT> org> CommitDate: Thu Jul 7 19:56:59 2022 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=c668644a
sci-biology/kalign: update EAPI 6 -> 8 Signed-off-by: David Seifert <soap <AT> gentoo.org> .../kalign/files/kalign-2.03-makefile.patch | 39 ++++++++++++++++++++++ sci-biology/kalign/kalign-2.03-r2.ebuild | 33 ------------------ sci-biology/kalign/kalign-2.03-r3.ebuild | 15 +++++++++ 3 files changed, 54 insertions(+), 33 deletions(-) diff --git a/sci-biology/kalign/files/kalign-2.03-makefile.patch b/sci-biology/kalign/files/kalign-2.03-makefile.patch new file mode 100644 index 000000000000..61e65c0b73ce --- /dev/null +++ b/sci-biology/kalign/files/kalign-2.03-makefile.patch @@ -0,0 +1,39 @@ +--- a/Makefile.in ++++ b/Makefile.in +@@ -1,7 +1,11 @@ +-PREFIX = /usr/local/bin ++prefix = @prefix@ ++exec_prefix = @exec_prefix@ ++bindir = @bindir@ + TEST = test/ +-CC = gcc +-CFLAGS = -O9 -Wall ++CC = @CC@ ++CFLAGS = @CFLAGS@ ++CPPFLAGS = @CPPFLAGS@ ++LDFLAGS = @LDFLAGS@ + DEBUGFLAGS = -ggdb -Wall + + SOURCES = kalign2_distance_calculation.c kalign2_dp.c kalign2_input.c kalign2_main.c kalign2_mem.c kalign2_inferface.c kalign2_misc.c kalign2_tree.c kalign2_profile.c kalign2_alignment_types.c kalign2_feature.c kalign2_hirschberg.c kalign2_advanced_gaps.c kalign2_hirschberg_dna.c kalign2_output.c kalign2_string_matching.c kalign2_profile_alignment.c +@@ -16,10 +20,7 @@ + .PHONY: clean + + all: $(OBJECTS) +- $(CC) $(CFLAGS) $(OBJECTS) -o $(PROGS) +- +-%.o: %.c +- $(CC) $(CFLAGS) -c $< ++ $(CC) $(LDFLAGS) $(CFLAGS) $(OBJECTS) -o $(PROGS) + + debug: $(DEBUGOBJECTS) + $(CC) $(DEBUGFLAGS) $(DEBUGOBJECTS) -o $(DEBUGPROGS) +@@ -29,7 +30,8 @@ + + + install: +- cp $(PROGS) /usr/local/bin/ ++ mkdir -p $(DESTDIR)$(bindir) ++ cp $(PROGS) $(DESTDIR)$(bindir) + + clean: + rm -f $(PROGS) $(OBJECTS) diff --git a/sci-biology/kalign/kalign-2.03-r2.ebuild b/sci-biology/kalign/kalign-2.03-r2.ebuild deleted file mode 100644 index 53b4490bef71..000000000000 --- a/sci-biology/kalign/kalign-2.03-r2.ebuild +++ /dev/null @@ -1,33 +0,0 @@ -# Copyright 1999-2017 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -inherit toolchain-funcs - -DESCRIPTION="Global and progressive multiple sequence alignment" -HOMEPAGE="http://msa.cgb.ki.se/"; -SRC_URI="mirror://debian/pool/main/k/kalign/${PN}_${PV}.orig.tar.gz" - -LICENSE="GPL-2" -SLOT="0" -IUSE="" -KEYWORDS="~amd64 ~x86" - -S=${WORKDIR}/${PN} - -src_prepare() { - default - sed \ - -e "s/\$(CFLAGS) \$(OBJECTS)/\$(LDFLAGS) &/" \ - -i Makefile.in || die -} - -src_compile() { - emake CC="$(tc-getCC)" CFLAGS="${CFLAGS}" -} - -src_install() { - dobin ${PN} - einstalldocs -} diff --git a/sci-biology/kalign/kalign-2.03-r3.ebuild b/sci-biology/kalign/kalign-2.03-r3.ebuild new file mode 100644 index 000000000000..22d92963a0ea --- /dev/null +++ b/sci-biology/kalign/kalign-2.03-r3.ebuild @@ -0,0 +1,15 @@ +# Copyright 1999-2022 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +DESCRIPTION="Global and progressive multiple sequence alignment" +HOMEPAGE="http://msa.cgb.ki.se/"; +SRC_URI="mirror://debian/pool/main/k/kalign/${PN}_${PV}.orig.tar.gz" +S="${WORKDIR}/${PN}" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86" + +PATCHES=( "${FILESDIR}"/${P}-makefile.patch )
