commit: c84e74a3b989e9b386b26a181e18e69276915eee Author: Matthias Maier <tamiko <AT> gentoo <DOT> org> AuthorDate: Sun Jun 26 03:17:37 2022 +0000 Commit: Matthias Maier <tamiko <AT> gentoo <DOT> org> CommitDate: Sun Jun 26 03:32:09 2022 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=c84e74a3
sci-libs/dealii: add 9.4.0 Signed-off-by: Matthias Maier <tamiko <AT> gentoo.org> sci-libs/dealii/Manifest | 2 + sci-libs/dealii/dealii-9.4.0.ebuild | 166 ++++++++++++++++++++++++++++++++++++ sci-libs/dealii/metadata.xml | 2 + 3 files changed, 170 insertions(+) diff --git a/sci-libs/dealii/Manifest b/sci-libs/dealii/Manifest index f3f2ba99e10a..94a0d4e45df5 100644 --- a/sci-libs/dealii/Manifest +++ b/sci-libs/dealii/Manifest @@ -2,3 +2,5 @@ DIST dealii-9.3.1-offline_documentation.tar.gz 342389060 BLAKE2B 71b47816dd22f49 DIST dealii-9.3.1.tar.gz 24459280 BLAKE2B c7f1d461017da24efd6f3247217fd1b889e0cbf2ac62c3fd305e03aed90d5ba82b58ceb84d34a84608b833b734e12abc77a63693aaa6eed767b4f5f157233ba0 SHA512 c3ba3e16fa4792bb4f3e85163e67b08271c84faff72c49b858a955851401adf2499e278790803061a61c4024964f6da3f0ef7b09c0370d8d0b5af16b7c3bdaef DIST dealii-9.3.3-offline_documentation.tar.gz 346914833 BLAKE2B 8a3661f44aef70c25837fca67175e410f1404991a5fa3698d2e732f1ae045f987a3d9c2fb21294de32768533968e94178f7537f2c3221afdb427fb10478257b5 SHA512 05d8c9573e8277c88f81ff318d295b099e2241c5358cc243eaae35044703a8abc8cac7b7b8049b3527d167f60b11820bd8418fde2e6a6929c03abbf6cc5b6658 DIST dealii-9.3.3.tar.gz 24462944 BLAKE2B 581a8c618fab96127ac95fe9ba5ea5410eb6f9193ce96b6a0d8d28dd125689fb11868115ae8163b7e223970321ddd75347ea21568ea1cdc1e783f94506f00d91 SHA512 31a05a2f539dd2336683c2ab887fef47f08a5127fe23163128036f3143c0c77dca08004b014704e1c7cc07d7578458636715dcbefd654e5fc4511d6d315b604d +DIST dealii-9.4.0-offline_documentation.tar.gz 390747598 BLAKE2B 6e8ed938b31a9e6bbbdd5baacce056edc31d489ecd3e9528283650f431d004ca122c968567fe342744d52bab8f8be53ab1b20d56636e2dc48f8cf551791a08bd SHA512 703eb50150ae5bd77f0d84271babd50483c3a9b069abb5b7e8827d00efaa5d189a43ac54f0ef8b2f746b12a10dc611669f5fddd655241a66af4915ec1d458185 +DIST dealii-9.4.0.tar.gz 30297914 BLAKE2B 6beb4c7b83f5316e703d4b77340900c376e622b1dc59c9058a8927174a8c6991994957588b6adf88238e72eec93f8941bfbfb2d0bb01070560468d051d9829f8 SHA512 3be740fbabff65a18870496f483ac4ed6d35c8a53b5128dd09b2dfabe82d60e4a75f02fd508b44f6c93805999aab98f551154f10ca2ad5fabede65c2d6dce320 diff --git a/sci-libs/dealii/dealii-9.4.0.ebuild b/sci-libs/dealii/dealii-9.4.0.ebuild new file mode 100644 index 000000000000..05e4e7dd00ec --- /dev/null +++ b/sci-libs/dealii/dealii-9.4.0.ebuild @@ -0,0 +1,166 @@ +# Copyright 1999-2022 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +# deal.II uses its own FindLAPACK.cmake file that calls into the system +# FindLAPACK.cmake module and does additional internal setup. Do not remove +# any of these modules: +CMAKE_REMOVE_MODULES_LIST="" + +inherit cmake flag-o-matic + +DESCRIPTION="Solving partial differential equations with the finite element method" +HOMEPAGE="https://www.dealii.org/"; + +if [[ ${PV} = *9999* ]]; then + inherit git-r3 + EGIT_REPO_URI="https://github.com/dealii/dealii.git"; + SRC_URI="" +else + SRC_URI="https://github.com/${PN}/${PN}/releases/download/v${PV}/${P}.tar.gz + doc? ( + https://github.com/${PN}/${PN}/releases/download/v${PV}/${P}-offline_documentation.tar.gz + )" + KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +fi + +LICENSE="LGPL-2.1+" +SLOT="0" +IUSE=" + adolc arborx assimp arpack cgal cpu_flags_x86_avx cpu_flags_x86_avx512f + cpu_flags_x86_sse2 cuda +debug doc +examples ginkgo gmsh +gsl hdf5 + +lapack metis mpi muparser opencascade p4est petsc scalapack slepc + +sparse static-libs sundials symengine trilinos +" + +# TODO: add slepc use flag once slepc is packaged for gentoo-science +REQUIRED_USE=" + arborx? ( trilinos ) + p4est? ( mpi ) + slepc? ( petsc ) + trilinos? ( mpi )" + +RDEPEND="dev-libs/boost:= + app-arch/bzip2 + sys-libs/zlib + dev-cpp/tbb:= + arborx? ( sci-libs/arborx[mpi=] ) + adolc? ( sci-libs/adolc ) + arpack? ( sci-libs/arpack[mpi=] ) + assimp? ( media-libs/assimp:= ) + cuda? ( dev-util/nvidia-cuda-toolkit ) + ginkgo? ( sci-libs/ginkgo ) + gmsh? ( sci-libs/gmsh ) + gsl? ( sci-libs/gsl:= ) + hdf5? ( sci-libs/hdf5[mpi=] ) + lapack? ( virtual/lapack ) + metis? ( + >=sci-libs/metis-5 + mpi? ( >=sci-libs/parmetis-4 ) + ) + mpi? ( virtual/mpi[cxx] ) + muparser? ( dev-cpp/muParser ) + opencascade? ( sci-libs/opencascade:= ) + p4est? ( sci-libs/p4est[mpi] ) + petsc? ( sci-mathematics/petsc[mpi=] ) + scalapack? ( sci-libs/scalapack ) + slepc? ( sci-mathematics/slepc[mpi=] ) + sparse? ( sci-libs/umfpack ) + sundials? ( sci-libs/sundials:= ) + symengine? ( >=sci-libs/symengine-0.4:= ) + trilinos? ( sci-libs/trilinos )" + +DEPEND="${RDEPEND} + virtual/pkgconfig + doc? ( app-doc/doxygen[dot] dev-lang/perl )" + +PATCHES=( + "${FILESDIR}"/${PN}-9.1.1-no-ld-flags.patch +) + +src_configure() { + # deal.II needs a custom build type: + local CMAKE_BUILD_TYPE=$(usex debug DebugRelease Release) + + local mycmakeargs=( + -DDEAL_II_PACKAGE_VERSION="${PV}" + -DCMAKE_INSTALL_RPATH_USE_LINK_PATH=OFF + -DDEAL_II_ALLOW_AUTODETECTION=OFF + -DDEAL_II_ALLOW_BUNDLED=OFF + -DDEAL_II_ALLOW_PLATFORM_INTROSPECTION=OFF + -DDEAL_II_COMPILE_EXAMPLES=OFF + -DDEAL_II_DOCHTML_RELDIR="share/doc/${P}/html" + -DDEAL_II_DOCREADME_RELDIR="share/doc/${P}" + -DDEAL_II_COMPILE_EXAMPLES=OFF + -DDEAL_II_EXAMPLES_RELDIR="share/doc/${P}/examples" + -DDEAL_II_LIBRARY_RELDIR="$(get_libdir)" + -DDEAL_II_SHARE_RELDIR="share/${PN}" + -DDEAL_II_WITH_ZLIB=ON + -DDEAL_II_WITH_ADOLC="$(usex adolc)" + -DDEAL_II_WITH_ARBORX="$(usex arborx)" + -DDEAL_II_WITH_ASSIMP="$(usex assimp)" + -DDEAL_II_WITH_ARPACK="$(usex arpack)" + -DDEAL_II_WITH_CGAL="$(usex cgal)" + -DDEAL_II_WITH_CUDA="$(usex cuda)" + -DDEAL_II_WITH_GINKGO="$(usex ginkgo)" + -DDEAL_II_COMPONENT_DOCUMENTATION="$(usex doc)" + -DDEAL_II_COMPONENT_EXAMPLES="$(usex examples)" + -DDEAL_II_WITH_GMSH="$(usex gmsh)" + -DDEAL_II_WITH_GSL="$(usex gsl)" + -DDEAL_II_WITH_HDF5="$(usex hdf5)" + -DDEAL_II_WITH_KOKKOS="$(usex trilinos)" + -DDEAL_II_WITH_LAPACK="$(usex lapack)" + -DDEAL_II_WITH_METIS="$(usex metis)" + -DDEAL_II_WITH_MPI="$(usex mpi)" + -DDEAL_II_WITH_MUPARSER="$(usex muparser)" + -DDEAL_II_WITH_OPENCASCADE="$(usex opencascade)" + -DDEAL_II_WITH_P4EST="$(usex p4est)" + -DDEAL_II_WITH_PETSC="$(usex petsc)" + -DDEAL_II_WITH_SCALAPACK="$(usex scalapack)" + -DDEAL_II_WITH_SLEPC="$(usex slepc)" + -DDEAL_II_WITH_SUNDIALS="$(usex sundials)" + -DDEAL_II_WITH_SYMENGINE="$(usex symengine)" + -DDEAL_II_WITH_UMFPACK="$(usex sparse)" + -DBUILD_SHARED_LIBS="$(usex !static-libs)" + -DDEAL_II_PREFER_STATIC_LIBS="$(usex static-libs)" + -DDEAL_II_WITH_TBB=ON + -DDEAL_II_WITH_TRILINOS="$(usex trilinos)" + ) + + use opencascade && mycmakeargs+=( + -DCMAKE_PREFIX_PATH="/usr/$(get_libdir)/opencascade" + ) + + # Do a little dance for purely cosmetic QA reasons. The build system + # does query for the highest instruction set first and skips the other + # variables if a "higher" variant is set + if use cpu_flags_x86_avx512f; then + mycmakeargs+=( -DDEAL_II_HAVE_AVX512=yes ) + append-cxxflags "-mavx512f" + elif use cpu_flags_x86_avx; then + mycmakeargs+=( -DDEAL_II_HAVE_AVX=yes ) + append-cxxflags "-mavx2" + elif use cpu_flags_x86_avx; then + mycmakeargs+=( -DDEAL_II_HAVE_SSE2=yes ) + append-cxxflags "-msse2" + fi + + cmake_src_configure +} + +src_install() { + if use doc && [[ ${PV} != *9999* ]]; then + # copy missing images to the build directory: + cp -r "${WORKDIR}"/doc/doxygen/deal.II/images \ + "${BUILD_DIR}"/doc/doxygen/deal.II || die + # replace links: + sed -i \ + 's#"http://www.dealii.org/images/steps/developer/\(step-.*\)"#"images/\1"#g' \ + "${BUILD_DIR}"/doc/doxygen/deal.II/step_*.html || die "sed failed" + fi + cmake_src_install + + # decompress the installed example sources: + use examples && docompress -x /usr/share/doc/${PF}/examples +} diff --git a/sci-libs/dealii/metadata.xml b/sci-libs/dealii/metadata.xml index 8b4433d57a7d..c25ce26eaf2c 100644 --- a/sci-libs/dealii/metadata.xml +++ b/sci-libs/dealii/metadata.xml @@ -17,7 +17,9 @@ to the complex data structures and algorithms required. </longdescription> <use> <flag name="adolc">Adds support for ADOL-C (<pkg>sci-libs/adolc</pkg>)</flag> + <flag name="arborx">Adds support for ARBORX (<pkg>sci-libs/arborx</pkg>)</flag> <flag name="arpack">Adds support for ARPACK (<pkg>sci-libs/arpack</pkg>)</flag> + <flag name="cgal">Adds support for CGAL (<pkg>sci-mathematics/cgal</pkg>)</flag> <flag name="debug"> Build an additional debug library with extra debug codepaths, like asserts and extra output. If you want to get meaningful backtraces see
