commit: 4a0dcf6b2ab6b2bc5725cc51b813bfa478bee3cf Author: Sam James <sam <AT> gentoo <DOT> org> AuthorDate: Sun Jun 12 10:26:07 2022 +0000 Commit: Sam James <sam <AT> gentoo <DOT> org> CommitDate: Sun Jun 12 10:36:25 2022 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=4a0dcf6b
sci-chemistry/openbabel: fix build with GCC 12 Closes: https://bugs.gentoo.org/851510 Signed-off-by: Sam James <sam <AT> gentoo.org> .../openbabel-3.1.1-fix-time-check-cmake.patch | 32 ++++++++++++++++++++++ .../openbabel/openbabel-3.1.1_p20210225.ebuild | 4 +++ 2 files changed, 36 insertions(+) diff --git a/sci-chemistry/openbabel/files/openbabel-3.1.1-fix-time-check-cmake.patch b/sci-chemistry/openbabel/files/openbabel-3.1.1-fix-time-check-cmake.patch new file mode 100644 index 000000000000..69e41211023b --- /dev/null +++ b/sci-chemistry/openbabel/files/openbabel-3.1.1-fix-time-check-cmake.patch @@ -0,0 +1,32 @@ +https://github.com/openbabel/openbabel/pull/2493 + +From: Sam James <[email protected]> +Date: Sun, 12 Jun 2022 11:23:59 +0100 +Subject: [PATCH] CMake: fix time check typo (fixes build failure w/ GCC 12) +MIME-Version: 1.0 +Content-Type: text/plain; charset=UTF-8 +Content-Transfer-Encoding: 8bit + +Without this fixed check, we get a build failure with GCC 12: +``` +/var/tmp/portage/sci-chemistry/openbabel-3.1.1_p20210225/work/openbabel-08e23f39b0cc39b4eebd937a5a2ffc1a7bac3e1b/include/openbabel/obutil.h:65:14: error: ‘clock’ was not declared in this scope; did you mean ‘clock_t’? + 65 | start= clock(); + | ^~~~~ + | clock_t +``` + +Bug: https://bugs.gentoo.org/851510 +--- a/src/config.h.cmake ++++ b/src/config.h.cmake +@@ -182,8 +182,8 @@ + #define OB_MODULE_PATH "@OB_MODULE_PATH@" + + #ifndef TIME_WITH_SYS_TIME +- #ifdef HAVE_SYS_TIME +- #ifdef HAVE_TIME ++ #ifdef HAVE_SYS_TIME_H ++ #ifdef HAVE_TIME_H + #define TIME_WITH_SYS_TIME 1 + #else + #define TIME_WITH_SYS_TIME 0 + diff --git a/sci-chemistry/openbabel/openbabel-3.1.1_p20210225.ebuild b/sci-chemistry/openbabel/openbabel-3.1.1_p20210225.ebuild index 61a6ad498b66..0eb8ddaa0cf5 100644 --- a/sci-chemistry/openbabel/openbabel-3.1.1_p20210225.ebuild +++ b/sci-chemistry/openbabel/openbabel-3.1.1_p20210225.ebuild @@ -80,6 +80,10 @@ RDEPEND=" ) " +PATCHES=( + "${FILESDIR}"/openbabel-3.1.1-fix-time-check-cmake.patch +) + pkg_pretend() { [[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp }
