commit: 3596083589625a3c954deccfdfb899b49a53a131 Author: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org> AuthorDate: Sat Feb 19 11:43:23 2022 +0000 Commit: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org> CommitDate: Sat Feb 19 11:43:23 2022 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=35960835
sci-biology/STAR: add version 2.7.10a Closes: https://bugs.gentoo.org/696714 Bug: https://bugs.gentoo.org/741152 Bug: https://bugs.gentoo.org/736056 Bug: https://bugs.gentoo.org/716300 Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org> sci-biology/STAR/Manifest | 1 + sci-biology/STAR/STAR-2.7.10a.ebuild | 41 ++++++++++++++++++++++++++++++++++++ 2 files changed, 42 insertions(+) diff --git a/sci-biology/STAR/Manifest b/sci-biology/STAR/Manifest index 35d580101e14..d8457898903d 100644 --- a/sci-biology/STAR/Manifest +++ b/sci-biology/STAR/Manifest @@ -1 +1,2 @@ DIST STAR-2.5.3a.tar.gz 9857460 BLAKE2B 32cc633862e6e81f5a5bdfc59986dca74e8adc4970a11a06c501065c5ad9cb37fc788f8e67ab2353292e683c8c385778cd0ffee69c0b15803796dbc445013a43 SHA512 8bd86ad384f2c0331fd701873b02641301f4205a5ff0fceeb800d425da42c53b6c61a74500d37fee7fc13a5bff10e1fb44b9142811883b8f5cd012f51f1f9fdf +DIST STAR-2.7.10a.tar.gz 12270915 BLAKE2B 51a9cf2c838cfeb313df9e5024b53cd5a89088f08ac88c8dc57a9e08cd3ba394e46ffe86a8ff3b9484b25b681ecd960098c06d879e772d21afe8cc2d0d35175d SHA512 19a5f3c25d147bcd96cf68249d275dad7fd11425031a40c97c7ae15846f55839ced897d541ed60b426a6bf089d968ac86625af774db3950dc459035ac2b659c9 diff --git a/sci-biology/STAR/STAR-2.7.10a.ebuild b/sci-biology/STAR/STAR-2.7.10a.ebuild new file mode 100644 index 000000000000..6b1c5b15d482 --- /dev/null +++ b/sci-biology/STAR/STAR-2.7.10a.ebuild @@ -0,0 +1,41 @@ +# Copyright 1999-2022 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +inherit toolchain-funcs + +DESCRIPTION="STAR aligner: align RNA-seq reads to reference genome uncompressed suffix arrays" +HOMEPAGE="https://github.com/alexdobin/STAR"; +SRC_URI="https://github.com/alexdobin/${PN}/archive/${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="GPL-3" +SLOT="0" +KEYWORDS="~amd64" + +RDEPEND="sci-libs/htslib:=" +DEPEND="${RDEPEND}" +BDEPEND="virtual/pkgconfig" + +DOCS=( README.md CHANGES.md RELEASEnotes.md doc/STARmanual.pdf ) + +pkg_pretend() { + [[ ${MERGE_TYPE} != binary ]] && tc-check-openmp +} + +pkg_setup() { + [[ ${MERGE_TYPE} != binary ]] && tc-check-openmp +} + +src_configure() { + tc-export CC CXX PKG_CONFIG +} + +src_compile() { + emake -C source STAR +} + +src_install() { + dobin source/STAR + einstalldocs +}
