commit: 58a63be80af5b547d2f6ceaa6377a84365ccfe41 Author: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org> AuthorDate: Tue Jan 25 13:28:59 2022 +0000 Commit: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org> CommitDate: Tue Jan 25 13:28:59 2022 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=58a63be8
sci-biology/LINKS: bump to 2.0.1 Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org> sci-biology/LINKS/LINKS-1.8.7.ebuild | 50 ------------------------------------ sci-biology/LINKS/LINKS-2.0.1.ebuild | 20 +++++++++++++++ 2 files changed, 20 insertions(+), 50 deletions(-) diff --git a/sci-biology/LINKS/LINKS-1.8.7.ebuild b/sci-biology/LINKS/LINKS-1.8.7.ebuild deleted file mode 100644 index 898898b94..000000000 --- a/sci-biology/LINKS/LINKS-1.8.7.ebuild +++ /dev/null @@ -1,50 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -DESCRIPTION="Scaffold genome assemblies by Chromium/PacBio/Nanopore reads" -HOMEPAGE="https://github.com/bcgsc/LINKS"; -SRC_URI="https://github.com/bcgsc/LINKS/archive/refs/tags/v${PV}.tar.gz -> ${P}.tar.gz" - -LICENSE="GPL-3" -SLOT="0" -KEYWORDS="" - -RESTRICT="test" - -RDEPEND=" - >=dev-lang/perl-1.6 - dev-lang/swig - dev-util/cppcheck -" -# sci-biology/btl_bloomfilter - -src_compile(){ - cd btllib | die "Cannot chdir to bundled btllib/" - ./compile-wrappers || die "Failed to compile bundled btllib" - # baah, this also does some kind of install - # SUCCESS: sdsl was installed successfully! - # The sdsl include files are located in $foo'/LINKS/btllib/external/sdsl-lite/installdir/include'. - # The library files are located in $foo'/LINKS/btllib/external/sdsl-lite/installdir/lib'. - # - # Sample programs can be found in the examples-directory. - # A program 'example.cpp' can be compiled with the command: - # g++ -std=c++11 -DNDEBUG -O3 [-msse4.2] \ - # -I$foo/LINKS/btllib/external/sdsl-lite/installdir/include -L$foo/LINKS/btllib/external/sdsl-lite/installdir/lib \ - # example.cpp -lsdsl -ldivsufsort -ldivsufsort64 - # - # Tests in the test-directory - # A cheat sheet in the extras/cheatsheet-directory. - # Have fun! - # [2/3] Installing files. - # Installing extras/python/_btllib.so to $foo/LINKS/btllib/python - # Installing $foo/LINKS/btllib/extras/python/btllib.py to $foo/LINKS/btllib/python -} - -src_install(){ - sed -e 's#$(bin)/../src/##' -i bin/LINKS-make || die - sed -e 's#perl $(bin)/##' -i bin/LINKS-make || die - dobin bin/LINKS bin/LINKS-make src/LINKS_CPP bin/*.pl tools/*.pl - dodoc README.md -} diff --git a/sci-biology/LINKS/LINKS-2.0.1.ebuild b/sci-biology/LINKS/LINKS-2.0.1.ebuild new file mode 100644 index 000000000..75d50a1b0 --- /dev/null +++ b/sci-biology/LINKS/LINKS-2.0.1.ebuild @@ -0,0 +1,20 @@ +# Copyright 1999-2022 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +DESCRIPTION="Scaffold genome assemblies by Chromium/PacBio/Nanopore reads" +HOMEPAGE="https://github.com/bcgsc/LINKS"; +SRC_URI="https://github.com/bcgsc/LINKS/releases/download/v${PV}/links-v${PV}.tar.gz -> ${P}.tar.gz" +S="${WORKDIR}/links-${PV}" + +LICENSE="GPL-3" +SLOT="0" +KEYWORDS="~amd64" + +RDEPEND=" + >=dev-lang/perl-1.6 + dev-lang/swig + dev-util/cppcheck +" +DEPEND="${RDEPEND}"
