commit: 4f86aedbcbd2669eb91f62364c7661a384629e11 Author: Martin Mokrejs <mmokrejs <AT> gmail <DOT> com> AuthorDate: Mon Oct 18 11:25:09 2021 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Mon Oct 18 11:25:09 2021 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=4f86aedb
sci-biology/longstitch: new package A simple Makefile to run all the dependencies at once. Package-Manager: Portage-3.0.28, Repoman-3.0.3 Signed-off-by: Martin Mokrejs <mmokrejs <AT> gmail.com> sci-biology/longstitch/longstitch-1.0.1.ebuild | 28 ++++++++++++++++++++++++++ sci-biology/longstitch/metadata.xml | 12 +++++++++++ 2 files changed, 40 insertions(+) diff --git a/sci-biology/longstitch/longstitch-1.0.1.ebuild b/sci-biology/longstitch/longstitch-1.0.1.ebuild new file mode 100644 index 000000000..787c3219b --- /dev/null +++ b/sci-biology/longstitch/longstitch-1.0.1.ebuild @@ -0,0 +1,28 @@ +# Copyright 1999-2021 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +DESCRIPTION="Scaffold genome assemblies by Chromium/PacBio/Nanopore reads" +HOMEPAGE="https://github.com/bcgsc/LongStitch"; +SRC_URI="https://github.com/bcgsc/LongStitch/archive/refs/tags/v${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="GPL-3" +SLOT="0" +KEYWORDS="~amd64 ~x86" + +RESTRICT="test" + +RDEPEND=" + sci-biology/abyss + sci-biology/tigmint + sci-biology/LINKS + sci-biology/samtools +" + +S="${WORKDIR}"/LongStitch-"${PV}" + +src_install(){ + dobin longstitch + dodoc README.md LongStitch_overview.pdf +} diff --git a/sci-biology/longstitch/metadata.xml b/sci-biology/longstitch/metadata.xml new file mode 100644 index 000000000..138cb7705 --- /dev/null +++ b/sci-biology/longstitch/metadata.xml @@ -0,0 +1,12 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <maintainer type="person"> + <email>[email protected]</email> + <name>Martin Mokrejs</name> + </maintainer> + <maintainer type="project"> + <email>[email protected]</email> + <name>Gentoo Biology Project</name> + </maintainer> +</pkgmetadata>
