commit: 2cb7d9aa5e80e00466947ae42c87844d2aea4fba Author: David Seifert <soap <AT> gentoo <DOT> org> AuthorDate: Mon Apr 5 14:14:35 2021 +0000 Commit: David Seifert <soap <AT> gentoo <DOT> org> CommitDate: Mon Apr 5 14:14:35 2021 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=2cb7d9aa
sci-biology/sibsim4: Port to EAPI 7 Package-Manager: Portage-3.0.18, Repoman-3.0.3 Signed-off-by: David Seifert <soap <AT> gentoo.org> .../sibsim4/files/sibsim4-0.20-makefile.patch | 26 ++++++++++++++++++++++ sci-biology/sibsim4/sibsim4-0.20.ebuild | 19 +++++----------- 2 files changed, 31 insertions(+), 14 deletions(-) diff --git a/sci-biology/sibsim4/files/sibsim4-0.20-makefile.patch b/sci-biology/sibsim4/files/sibsim4-0.20-makefile.patch new file mode 100644 index 00000000000..6436747e3dd --- /dev/null +++ b/sci-biology/sibsim4/files/sibsim4-0.20-makefile.patch @@ -0,0 +1,26 @@ +--- a/Makefile ++++ b/Makefile +@@ -21,13 +21,12 @@ + # to change it to this: + # CFLAGS = -Xc + +-CFLAGS = -std=gnu99 -W -Wall -Wconversion -pedantic $(DEBUG) $(OPT) ++CFLAGS += -std=gnu99 -Wall -Wconversion -pedantic + + + # The default is GCC. On Solaris, you might put: + # CC = /opt/SUNWspro/bin/cc + +-CC = gcc + + + # Depending on the compile flags you use, you might need to explicitly use the +@@ -42,7 +41,7 @@ + OBJS = sim4b1.o align.o misc.o sim4.init.o + + sim4: $(OBJS) +- $(CC) -o SIBsim4 $(CFLAGS) $(OBJS) $(LIBS) ++ $(CC) $(CFLAGS) $(LDFLAGS) -o SIBsim4 $(OBJS) $(LIBS) + + clean: + rm -f SIBsim4 *.o diff --git a/sci-biology/sibsim4/sibsim4-0.20.ebuild b/sci-biology/sibsim4/sibsim4-0.20.ebuild index bf431c66692..679cb462e04 100644 --- a/sci-biology/sibsim4/sibsim4-0.20.ebuild +++ b/sci-biology/sibsim4/sibsim4-0.20.ebuild @@ -1,31 +1,22 @@ -# Copyright 1999-2013 Gentoo Foundation +# Copyright 1999-2021 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=5 +EAPI=7 inherit toolchain-funcs DESCRIPTION="A rewrite and improvement upon sim4, a DNA-mRNA aligner" HOMEPAGE="http://sibsim4.sourceforge.net/"; SRC_URI="mirror://sourceforge/${PN}/SIBsim4-${PV}.tar.gz" +S="${WORKDIR}/SIBsim4-${PV}" LICENSE="GPL-2" SLOT="0" -IUSE="" KEYWORDS="amd64 x86" -DEPEND="" -RDEPEND="" - -S="${WORKDIR}/SIBsim4-${PV}" +PATCHES=( "${FILESDIR}"/${P}-makefile.patch ) -src_prepare() { - sed \ - -e 's/CFLAGS = /CFLAGS +=/' \ - -e '/^CC/s:=:?=:' \ - -e '/^OPT/d' \ - -e "s:-o:${LDFLAGS} -o:g" \ - -i "${S}/Makefile" || die +src_configure() { tc-export CC }
