commit: 17ca0e1b3b8cda81f6028b21303d8c64021c2947 Author: David Seifert <soap <AT> gentoo <DOT> org> AuthorDate: Mon Apr 5 14:14:41 2021 +0000 Commit: David Seifert <soap <AT> gentoo <DOT> org> CommitDate: Mon Apr 5 14:14:41 2021 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=17ca0e1b
sci-biology/mothur: Port to EAPI 7 Package-Manager: Portage-3.0.18, Repoman-3.0.3 Signed-off-by: David Seifert <soap <AT> gentoo.org> sci-biology/mothur/mothur-1.27.0-r1.ebuild | 35 +++++++++++++++--------------- 1 file changed, 17 insertions(+), 18 deletions(-) diff --git a/sci-biology/mothur/mothur-1.27.0-r1.ebuild b/sci-biology/mothur/mothur-1.27.0-r1.ebuild index 9e9bf216031..12b628475aa 100644 --- a/sci-biology/mothur/mothur-1.27.0-r1.ebuild +++ b/sci-biology/mothur/mothur-1.27.0-r1.ebuild @@ -1,43 +1,42 @@ -# Copyright 1999-2018 Gentoo Foundation +# Copyright 1999-2021 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=5 +EAPI=7 -inherit eutils flag-o-matic fortran-2 toolchain-funcs +inherit flag-o-matic fortran-2 toolchain-funcs DESCRIPTION="A suite of algorithms for ecological bioinformatics" HOMEPAGE="https://www.mothur.org/"; SRC_URI="https://www.mothur.org/w/images/c/cb/Mothur.${PV}.zip -> ${P}.zip" +S="${WORKDIR}/${PN^}.source" LICENSE="GPL-3" SLOT="0" -IUSE="mpi +readline" KEYWORDS="amd64 x86" +IUSE="mpi +readline" RDEPEND=" sci-biology/uchime mpi? ( virtual/mpi )" -DEPEND="${RDEPEND} - app-arch/unzip" +DEPEND="${RDEPEND}" +BDEPEND="app-arch/unzip" -S=${WORKDIR}/Mothur.source +PATCHES=( + "${FILESDIR}"/${P}-makefile.patch + "${FILESDIR}"/${P}-overflows.patch +) -pkg_setup() { - fortran-2_pkg_setup - use mpi && export CXX=mpicxx || export CXX=$(tc-getCXX) +src_configure() { + use mpi && export CXX=mpicxx || tc-export CXX use amd64 && append-cppflags -DBIT_VERSION } -src_prepare() { - epatch \ - "${FILESDIR}"/${P}-makefile.patch \ - "${FILESDIR}"/${P}-overflows.patch -} - src_compile() { - emake USEMPI=$(usex mpi) USEREADLINE=$(usex readline) + emake \ + USEMPI=$(usex mpi) \ + USEREADLINE=$(usex readline) } src_install() { - dobin ${PN} + dobin mothur }
