commit: e3c868fdcb628a652f306cf48a793a3e510fc4c0 Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net> AuthorDate: Thu Mar 18 10:43:29 2021 +0000 Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net> CommitDate: Thu Mar 18 10:43:58 2021 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=e3c868fd
sci-biology/perga: EAPI bump, fix build Package-Manager: Portage-3.0.17, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net> profiles/package.mask | 5 ----- sci-biology/perga/perga-9999.ebuild | 13 +++++++------ 2 files changed, 7 insertions(+), 11 deletions(-) diff --git a/profiles/package.mask b/profiles/package.mask index 823764d0f..c58354855 100644 --- a/profiles/package.mask +++ b/profiles/package.mask @@ -79,11 +79,6 @@ sci-biology/grass # Masked for removal in 14 days, if you need this please complain sci-biology/igv -# Andrew Ammerlaan <[email protected]> (06 March 2021) -# Does not compile, latest update in 2015 -# Masked for removal in 14 days, if you need this please complain -sci-biology/perga - # Andrew Ammerlaan <[email protected]> (06 March 2021) # Does not fetch, last update in 2009 # Masked for removal in 14 days, if you need this please complain diff --git a/sci-biology/perga/perga-9999.ebuild b/sci-biology/perga/perga-9999.ebuild index aeb6e2630..267b31ce4 100644 --- a/sci-biology/perga/perga-9999.ebuild +++ b/sci-biology/perga/perga-9999.ebuild @@ -1,9 +1,9 @@ -# Copyright 1999-2016 Gentoo Foundation +# Copyright 1999-2021 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=5 +EAPI=7 -inherit git-r3 eutils toolchain-funcs +inherit flag-o-matic git-r3 toolchain-funcs DESCRIPTION="Paired End Reads Guided Assembler" HOMEPAGE="https://github.com/hitbio/PERGA @@ -13,17 +13,18 @@ EGIT_REPO_URI="https://github.com/hitbio/PERGA.git"; LICENSE="all-rights-reserved" SLOT="0" KEYWORDS="" -IUSE="" DEPEND="" RDEPEND="${DEPEND}" src_prepare(){ + default + # needed for newer gcc versions + append-cflags -Wl,--unresolved-symbols=ignore-in-object-files sed -e "s/gcc -g /$(tc-getCC) ${CFLAGS} ${LDFLAGS} /" -i src/Makefile || die sed -e 's/-Wl,-O1//' -i src/Makefile || die } -# does not compile with gcc-5.3.0 but 4.9.3 works src_compile(){ cd src || die emake @@ -31,5 +32,5 @@ src_compile(){ src_install(){ dobin src/perga - dodoc README + einstalldocs }
