commit: e64ebae93a9c2400017021a17b7c055050ea7296 Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net> AuthorDate: Sat Mar 6 16:24:54 2021 +0000 Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net> CommitDate: Sat Mar 6 16:24:54 2021 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=e64ebae9
sci-biology/tabixpp: add new dep for vcflib Package-Manager: Portage-3.0.16, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net> sci-biology/tabixpp/metadata.xml | 11 +++++++++++ sci-biology/tabixpp/tabixpp-1.1.0.ebuild | 29 +++++++++++++++++++++++++++++ 2 files changed, 40 insertions(+) diff --git a/sci-biology/tabixpp/metadata.xml b/sci-biology/tabixpp/metadata.xml new file mode 100644 index 000000000..6a36d8a92 --- /dev/null +++ b/sci-biology/tabixpp/metadata.xml @@ -0,0 +1,11 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <maintainer type="project"> + <email>[email protected]</email> + <name>Gentoo Biology Project</name> + </maintainer> + <upstream> + <remote-id type="github">vcflib/vcflib</remote-id> + </upstream> +</pkgmetadata> diff --git a/sci-biology/tabixpp/tabixpp-1.1.0.ebuild b/sci-biology/tabixpp/tabixpp-1.1.0.ebuild new file mode 100644 index 000000000..9d6192d93 --- /dev/null +++ b/sci-biology/tabixpp/tabixpp-1.1.0.ebuild @@ -0,0 +1,29 @@ +# Copyright 1999-2021 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +inherit toolchain-funcs multilib + +DESCRIPTION="C++ wrapper to tabix indexer " +HOMEPAGE="https://github.com/ekg/tabixpp"; +SRC_URI="https://github.com/ekg/tabixpp/archive/v${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="MIT" +SLOT="0" +KEYWORDS="~amd64" + +DEPEND="sci-biology/samtools:0" +RDEPEND="${DEPEND}" + +src_prepare(){ + default + sed -e 's@HTS_HEADERS?= htslib/htslib/bgzf.h htslib/htslib/tbx.h@HTS_HEADERS?= /usr/include/htslib/bgzf.h /usr/include/htslib/tbx.h@g' -i Makefile || die + sed -e 's@HTS_LIB?= htslib/libhts.a@HTS_LIB?= /usr/'"$(get_libdir)"'/libhts.so@g' -i Makefile || die +} + +src_install() { + einstalldocs + dobin tabix++ + doheader tabix.hpp +}
