commit: ecd12f1d4e2e1386bede67c475e89b00537e5b8c Author: Aisha Tammy <gentoo <AT> aisha <DOT> cc> AuthorDate: Sun Feb 14 11:54:39 2021 +0000 Commit: Aisha Tammy <gentoo <AT> aisha <DOT> cc> CommitDate: Sun Feb 14 11:55:01 2021 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=ecd12f1d
sys-cluster/lmod: lmod is now in ::gentoo Signed-off-by: Aisha Tammy <gentoo <AT> aisha.cc> .../lmod/files/lmod-8.4.19-no-libsandbox.patch | 13 - sys-cluster/lmod/files/module.1-8.4.20 | 388 --------------------- sys-cluster/lmod/lmod-8.4.20.ebuild | 125 ------- sys-cluster/lmod/lmod-9999.ebuild | 125 ------- sys-cluster/lmod/metadata.xml | 31 -- 5 files changed, 682 deletions(-) diff --git a/sys-cluster/lmod/files/lmod-8.4.19-no-libsandbox.patch b/sys-cluster/lmod/files/lmod-8.4.19-no-libsandbox.patch deleted file mode 100644 index 02248bc45..000000000 --- a/sys-cluster/lmod/files/lmod-8.4.19-no-libsandbox.patch +++ /dev/null @@ -1,13 +0,0 @@ -diff --git a/configure.ac b/configure.ac -index ca75e34c..e9cc49e0 100644 ---- a/configure.ac -+++ b/configure.ac -@@ -616,7 +616,7 @@ AC_SUBST(SYS_LD_LIB_PATH) - SYS_LD_LIB_PATH=$LD_LIBRARY_PATH - - AC_SUBST(SYS_LD_PRELOAD) --SYS_LD_PRELOAD=$LD_PRELOAD -+SYS_LD_PRELOAD=$(printf %s\\n $LD_PRELOAD | sed -e "s/libsandbox.so//g") - - AC_SUBST(PATH_TO_SRC) - SRCDIR=$( cd $srcdir; pwd) diff --git a/sys-cluster/lmod/files/module.1-8.4.20 b/sys-cluster/lmod/files/module.1-8.4.20 deleted file mode 100644 index cbd852dd1..000000000 --- a/sys-cluster/lmod/files/module.1-8.4.20 +++ /dev/null @@ -1,388 +0,0 @@ -.Dd $Mdocdate: December 6 2020 $ -.Dt MODULE 1 -.Os -.Sh NAME -.Nm module -.Nd lmod environment modules manager -.Sh SYNOPSIS -.Nm module -.Op options -.Cm sub-command -.Op args ... -.Sh DESCRIPTION -.Nm -from -.Sy Lmod -is a -.Xr lua 1 -based program to manage the user environment under -Unix systems, specifically designed to easily handle -the -.Ev MODULEPATH -Hierarchical problem. -Environment Modules provide a convenient way to -dynamically change the users' environment through modulefiles. -This includes easily adding or removing directories to the -.Ev PATH , LD_LIBRARY_PATH -and other environment variables. -.Sh OPTIONS -The following -.Ar options -are available: -.Pp -.Bl -tag -width Ds -compact -.It Fl h , \&? , H , -help -Show the help message. -.Pp -.It Fl -check_syntax , -checkSyntax -Only check the -.Nm -command syntax, do not load any modules. -.Pp -.It Fl -config -Report -.Sy Lmod -configuration. -.Pp -.It Fl -config_json -Report -.Sy Lmod -configuration in json format. -.Pp -.It Fl D -Write program tracing data to stderr. -.Pp -.It Fl d , -default -List default modules only when used with -.Cm avail . -.Pp -.It Fl -debug Ar dbglvl -.Sy VALUES : -1, 2, 3. -.Pp -Only write trace output with proper debug levels. -.Pp -.It Fl -dumpversion -Dump version in a machine readable way and quit. -.Pp -.It Fl -expert -Work in expert mode. -.Pp -.It Fl -force -Force removal of a sticky module or save an empty collection. -.Pp -.It Fl -gitversion -Dump git version in a machine readable way and quit. -.Pp -.It Fl -ignore_cache -Treat the cache file(s) as out-of-date. -.Pp -.It Fl -initial_load -Loading Lmod for first time in a user shell. -.Pp -.It Fl -latest -Load latest (ignore default). -.Pp -.It Fl -mt -Report Module Table State. -.Pp -.It Fl -no_redirect -Force output of -.Cm list , -.Cm avail -and -.Cm spider -to stderr. -.Pp -.It Fl -novice -Turn off -.Fl -expert -and -.Fl -quiet -flags. -.Pp -.It Fl -nx , -no_extensions -.Pp -.It Fl -pin_versions Ar pinVersions -When doing a restore use the specified version, do not follow defaults. -.Pp -.It Fl q , -quiet -Do not print out warnings. -.Pp -.It Fl r , -regexp -Use regular expression match. -.Pp -.It Fl -raw -Print modulefile in raw output when used with show. -.Pp -.It Fl -redirect -Send the output of -.Cm list , -.Cm avail -and -.Cm spider -to stdout (not stderr). -.Pp -.It Fl -regression_testing -Lmod regression testing. -.Pp -.It Fl -show_hidden -.Cm avail -and -.Cm spider -will report hidden modules. -.Pp -.It Fl -spider_timeout Ar timeout -A timeout for -.Cm spider . -.Pp -.It Fl s , -style Ar availStyle -.Sy DEFAULT : -system -Site controlled avail style. -.Pp -.It Fl T , -trace -.Pp -.It Fl t , -terse -Write out in machine readable format for -.Cm list , -.Cm avail , -.Cm spider -and -.Cm savelist . -.Pp -.It Fl -timer -Report run times. -.Pp -.It Fl v , -version -Print version info and quit. -.Pp -.It Fl -w , -width Ar twidth -Use -.Ar twidth -as max term width. -.El -.Sh SUB-COMMANDS -.Ss HELP -.Bl -tag -width Ds -compact -.It Cm help -Print the help message. -.Pp -.It Cm help Ar module Op moduleX moduleY ... -Print help messages from the given module(s). -.El -.Ss LOAD -.Bl -tag -width Ds -compact -.It Cm load , add Ar module Op moduleX moduleY ... -Load module(s) -.Pp -.It Cm try-load , try-add Ar module Op moduleX module Y ... -Load module(s), do not complain if not found -.Pp -.It Cm del , unload Ar module Op moduleX moduleY ... -Unload module(s), does not complain if not found -.Pp -.It Cm swap , sw , switch Ar m1 m2 -.Cm unload -.Ar m1 -and -.Cm load -.Ar m2 -.Pp -.It Cm purge -.Cm unload -all modules -.Pp -.It Cm refresh -Reload aliases from current list of modules. -.Pp -.It Cm update -Reload all currently loaded modules. -.El -.Ss SEARCH -.Bl -tag -width Ds -compact -.It Cm list -List all loaded modules. -.Pp -.It Cm list Ar s1 Op Ar s2 ... -List all loaded modules that match any of the given patterns. -.Pp -.It Cm avail , av Op Ar string -List all available modules. -Restricts to modules containing -.Ar string -if it is provided. -.Pp -.It Cm spider -List all possible modules. -.Pp -.It Cm spider Ar module -List all possible versions of that -.Ar module -file. -.Pp -.It Cm spider Ar string -List all modules that contain -.Ar string . -.Pp -.It Cm spider Ar name/version -Detailed information about that version of the module. -.Pp -.It Cm whatis Ar module -Print whatis information about the module. -.Pp -.It Cm keyword , key Ar string -Search all name and -.Cm whatis -that contain -.Ar string . -.El -.Pp -All searching commands ( -.Cm spider , -.Cm list , -.Cm avail , -.Cm keyword -) support regular expressions. -.Pp -For example, to find all modules that start with -.Sq p -or -.Sq P : -.D1 module -r spider '^p' -.Pp -Find all modules that have -.Dq mpi -in their name: -.D1 module -r spider mpi -.Pp -Find all modules that end with -.Dq mpi -in their name: -.D1 module -r spider 'mpi$' -.Ss COLLECTIONS -.Bl -tag -width Ds -compact -.It Cm save , s -Save the current list of modules to a user defined -.Dq default -collection. -.Pp -.It Cm save , s Ar name -Save the current list of modules to the -.Ar name -collection. -.Pp -.It Cm reset -The same as -.Cm restore -.Ar system . -.Pp -.It Cm restore , r -Restore modules from the user's -.Dq default -(if defined) or the system default. -.Pp -.It Cm restore , r Ar name -Restore modules from -.Ar name -collection. -.Pp -.It Cm restore Ar system -Restore module state to system defaults. -.Pp -.It Cm savelist -List of saved collections. -.Pp -.It Cm describe , mcc Ar name -Describe the contents of the -.Ar name -module collection. -.Pp -.It Cm disable Ar name -Disable (i.e. remove) the -.Ar name -collection. -.El -.Ss DEPRECATED -.Bl -tag -width Ds -compact -.It Cm getdefault Op Ar name -Load the -.Ar name -collection of modules or users -.Dq default -if no -.Ar name -given. -.Pp -Use -.Cm restore -Instead. -.Pp -.It Cm setdefault Op Ar name -Save current list of modules to -.Ar name -if given, otherwise save as the -.Dq default -list for the user. -.Pp -Use -.Cm save -instead. -.El -.Ss MISC -.Bl -tag -width Ds -compact -.It Cm is-loaded Ar modulefile -Return a true status if -.Ar module -is loaded. -.Pp -.It Cm is-avail Ar modulefile -Return a true status if -.Ar module -can be loaded. -.Pp -.It Cm show Ar modulefile -Show the commands in the -.Ar module -file. -.Pp -.It Cm use [-a] Ar path -Prepend or append -.Ar path -to -.Ev MODULEPATH . -.Pp -.It Cm unuse Ar path -Remove -.Ar path -from -.Ev MODULEPATH . -.Pp -.It Cm tablelist -Output list of active modules as a lua table. -.El -.Sh ENVIRONMENT -To print properties and warnings in color, set the -.Ev LMOD_COLORIZE -environment variable to -.Sy YES -.Sh SEE ALSO -.Bd -filled -offset indent -.TS -allbox tab(@); -le lw10. -Documentation@http://lmod.readthedocs.org -Github@https://github.com/TACC/Lmod -Sourceforge@https://lmod.sf.net -TACC Homepage@https://www.tacc.utexas.edu/research-development/tacc-projects/lmod -.TE -.Ed -.Pp -To report a bug please read -.Lk http://lmod.readthedocs.io/en/latest/075_bug_reporting.html -.Sh AUTHORS -Modules based on Lua, written by -.An Robert McLay Aq Mt [email protected] . -.Pp -The man page for Gentoo linux is maintained by the -.An Gentoo Science Project <[email protected]> . diff --git a/sys-cluster/lmod/lmod-8.4.20.ebuild b/sys-cluster/lmod/lmod-8.4.20.ebuild deleted file mode 100644 index 1e4660090..000000000 --- a/sys-cluster/lmod/lmod-8.4.20.ebuild +++ /dev/null @@ -1,125 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -LUA_COMPAT=( lua5-{1..3} ) -inherit autotools lua-single - -DESCRIPTION="Environment Module System based on Lua" -HOMEPAGE="https://lmod.readthedocs.io/en/latest"; - -if [[ ${PV} == 9999 ]]; then - inherit git-r3 - EGIT_REPO_URI="https://github.com/TACC/Lmod"; -else - SRC_URI="https://github.com/TACC/Lmod/archive/${PV}.tar.gz -> ${P}.tar.gz" - S="${WORKDIR}"/Lmod-${PV} - KEYWORDS="~amd64 ~x86" -fi - -LICENSE="MIT" -SLOT="0" -IUSE="auto-swap cache dotfiles duplicate +extend italic module-cmd nocase redirect test" -REQUIRED_USE="${LUA_REQUIRED_USE}" -RESTRICT="!test? ( test )" - -RDEPEND="${LUA_DEPS} - app-shells/tcsh - || ( - app-shells/loksh - app-shells/mksh - app-shells/ksh - ) - app-shells/zsh - dev-lang/tcl - dev-lang/tk - $(lua_gen_cond_dep ' - >=dev-lua/luafilesystem-1.8.0[${LUA_USEDEP}] - dev-lua/luajson[${LUA_USEDEP}] - dev-lua/luaposix[${LUA_USEDEP}] - dev-lua/lua-term[${LUA_USEDEP}] - ') - virtual/pkgconfig -" -DEPEND="${RDEPEND}" -BDEPEND="${RDEPEND} - test? ( - $(lua_gen_cond_dep ' - dev-util/hermes[${LUA_SINGLE_USEDEP}] - ') - ) -" - -PATCHES=( "${FILESDIR}"/${PN}-8.4.19-no-libsandbox.patch ) - -pkg_pretend() { - elog "You can control the siteName and syshost settings by" - elog "using the variables LMOD_SITENAME and LMOD_SYSHOST, during" - elog "build time, which are both set to 'Gentoo' by default." - elog "There are a lot of options for this package, especially" - elog "for run time behaviour. Remember to use the EXTRA_ECONF variable." - elog "To see full list of options visit:" - elog "\t https://lmod.readthedocs.io/en/latest/090_configuring_lmod.html"; -} - -src_prepare() { - default - rm -rf pkgs/{luafilesystem,term} || die - rm -rf rt/{ck_mtree_syntax,colorize,end2end,help,ifur,settarg} || die - eautoreconf -} - -src_configure() { - local LMOD_SITENAME="${LMOD_SITENAME:-Gentoo}" - local LMOD_SYSHOST="${LMOD_SYSHOST:-Gentoo}" - - local LUAC="${LUA%/*}/luac${LUA#*lua}" - - local myconf=( - --with-tcl - --with-fastTCLInterp - --with-colorize - --with-supportKsh - --without-useBuiltinPkgs - --with-siteControlPrefix - --with-siteName="${LMOD_SITENAME}" - --with-syshost="${LMOD_SYSHOST}" - --with-lua_include="$(lua_get_include_dir)" - --with-lua="${LUA}" - --with-luac="${LUAC}" - --with-module-root-path="${EPREFIX}/etc/modulefiles" - --with-updateSystemFn="${EPREFIX}/etc/modulefiles/.lmod_system_update" - --prefix="${EPREFIX}/usr/share/Lmod" - $(use_with duplicate duplicatePaths) - $(use_with nocase caseIndependentSorting) - $(use_with italic hiddenItalic) - $(use_with auto-swap autoSwap) - $(use_with module-cmd exportedModuleCmd) - $(use_with redirect) - $(use_with dotfiles useDotFiles) - $(use_with cache cachedLoads) - $(use_with extend extendedDefault) - ) - econf "${myconf[@]}" -} - -src_compile() { - CFLAGS="${CFLAGS}" LDFLAGS="${LDFLAGS}" \ - default -} - -src_test() { - local -x PATH="/opt/hermes/bin:${PATH}" - tm -vvv || die - testcleanup || die -} - -src_install() { - default - newman "${FILESDIR}"/module.1-8.4.20 module.1 - insinto /etc/profile.d - newins "${ED}"/usr/share/Lmod/init/profile lmod.sh - newins "${ED}"/usr/share/Lmod/init/profile.fish lmod.fish - keepdir /etc/modulefiles -} diff --git a/sys-cluster/lmod/lmod-9999.ebuild b/sys-cluster/lmod/lmod-9999.ebuild deleted file mode 100644 index 1e4660090..000000000 --- a/sys-cluster/lmod/lmod-9999.ebuild +++ /dev/null @@ -1,125 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -LUA_COMPAT=( lua5-{1..3} ) -inherit autotools lua-single - -DESCRIPTION="Environment Module System based on Lua" -HOMEPAGE="https://lmod.readthedocs.io/en/latest"; - -if [[ ${PV} == 9999 ]]; then - inherit git-r3 - EGIT_REPO_URI="https://github.com/TACC/Lmod"; -else - SRC_URI="https://github.com/TACC/Lmod/archive/${PV}.tar.gz -> ${P}.tar.gz" - S="${WORKDIR}"/Lmod-${PV} - KEYWORDS="~amd64 ~x86" -fi - -LICENSE="MIT" -SLOT="0" -IUSE="auto-swap cache dotfiles duplicate +extend italic module-cmd nocase redirect test" -REQUIRED_USE="${LUA_REQUIRED_USE}" -RESTRICT="!test? ( test )" - -RDEPEND="${LUA_DEPS} - app-shells/tcsh - || ( - app-shells/loksh - app-shells/mksh - app-shells/ksh - ) - app-shells/zsh - dev-lang/tcl - dev-lang/tk - $(lua_gen_cond_dep ' - >=dev-lua/luafilesystem-1.8.0[${LUA_USEDEP}] - dev-lua/luajson[${LUA_USEDEP}] - dev-lua/luaposix[${LUA_USEDEP}] - dev-lua/lua-term[${LUA_USEDEP}] - ') - virtual/pkgconfig -" -DEPEND="${RDEPEND}" -BDEPEND="${RDEPEND} - test? ( - $(lua_gen_cond_dep ' - dev-util/hermes[${LUA_SINGLE_USEDEP}] - ') - ) -" - -PATCHES=( "${FILESDIR}"/${PN}-8.4.19-no-libsandbox.patch ) - -pkg_pretend() { - elog "You can control the siteName and syshost settings by" - elog "using the variables LMOD_SITENAME and LMOD_SYSHOST, during" - elog "build time, which are both set to 'Gentoo' by default." - elog "There are a lot of options for this package, especially" - elog "for run time behaviour. Remember to use the EXTRA_ECONF variable." - elog "To see full list of options visit:" - elog "\t https://lmod.readthedocs.io/en/latest/090_configuring_lmod.html"; -} - -src_prepare() { - default - rm -rf pkgs/{luafilesystem,term} || die - rm -rf rt/{ck_mtree_syntax,colorize,end2end,help,ifur,settarg} || die - eautoreconf -} - -src_configure() { - local LMOD_SITENAME="${LMOD_SITENAME:-Gentoo}" - local LMOD_SYSHOST="${LMOD_SYSHOST:-Gentoo}" - - local LUAC="${LUA%/*}/luac${LUA#*lua}" - - local myconf=( - --with-tcl - --with-fastTCLInterp - --with-colorize - --with-supportKsh - --without-useBuiltinPkgs - --with-siteControlPrefix - --with-siteName="${LMOD_SITENAME}" - --with-syshost="${LMOD_SYSHOST}" - --with-lua_include="$(lua_get_include_dir)" - --with-lua="${LUA}" - --with-luac="${LUAC}" - --with-module-root-path="${EPREFIX}/etc/modulefiles" - --with-updateSystemFn="${EPREFIX}/etc/modulefiles/.lmod_system_update" - --prefix="${EPREFIX}/usr/share/Lmod" - $(use_with duplicate duplicatePaths) - $(use_with nocase caseIndependentSorting) - $(use_with italic hiddenItalic) - $(use_with auto-swap autoSwap) - $(use_with module-cmd exportedModuleCmd) - $(use_with redirect) - $(use_with dotfiles useDotFiles) - $(use_with cache cachedLoads) - $(use_with extend extendedDefault) - ) - econf "${myconf[@]}" -} - -src_compile() { - CFLAGS="${CFLAGS}" LDFLAGS="${LDFLAGS}" \ - default -} - -src_test() { - local -x PATH="/opt/hermes/bin:${PATH}" - tm -vvv || die - testcleanup || die -} - -src_install() { - default - newman "${FILESDIR}"/module.1-8.4.20 module.1 - insinto /etc/profile.d - newins "${ED}"/usr/share/Lmod/init/profile lmod.sh - newins "${ED}"/usr/share/Lmod/init/profile.fish lmod.fish - keepdir /etc/modulefiles -} diff --git a/sys-cluster/lmod/metadata.xml b/sys-cluster/lmod/metadata.xml deleted file mode 100644 index 80a3693f7..000000000 --- a/sys-cluster/lmod/metadata.xml +++ /dev/null @@ -1,31 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> -<pkgmetadata> - <maintainer type="person"> - <email>[email protected]</email> - <name>Aisha Tammy</name> - </maintainer> - <maintainer type="project"> - <email>[email protected]</email> - <name>Gentoo Science Project</name> - </maintainer> - <longdescription> - Lmod is a lua based program to manage the user environment - under Unix systems, specifically designed to easily handle the MODULEPATH - Hierarchical problem. Environment Modules provide a convenient way to - dynamically change the users' environment through modulefiles. This - includes easily adding or removing directories to the PATH, - LD_LIBRARY_PATH and other environment variables. - </longdescription> - <use> - <flag name="auto-swap">enable auto swapping of compiler</flag> - <flag name="cache">enable caching of modules</flag> - <flag name="dotfiles">use ~/.lmod.d/.cache instead of ~/.lmod.d/__cache__</flag> - <flag name="duplicate">allow duplicate entries in path</flag> - <flag name="extend">enable extended default functionality</flag> - <flag name="italic">use italics, instead of faint colors, to represent hidden folders</flag> - <flag name="module-cmd">export module command</flag> - <flag name="nocase">do case insensitive sortings and searches</flag> - <flag name="redirect">redirect messages to stdout</flag> - </use> -</pkgmetadata>
