commit: b82fc54234ed593fafb5a8426eb540d680b0e8da
Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Sat Feb 13 11:16:07 2021 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Sat Feb 13 11:16:07 2021 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=b82fc542
sci-biology/kmergenie: version bump, correctly depend on python
Package-Manager: Portage-3.0.14, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>
sci-biology/kmergenie/kmergenie-1.6971.ebuild | 44 ---------------------------
sci-biology/kmergenie/kmergenie-1.7048.ebuild | 22 ++++++++++++++
2 files changed, 22 insertions(+), 44 deletions(-)
diff --git a/sci-biology/kmergenie/kmergenie-1.6971.ebuild
b/sci-biology/kmergenie/kmergenie-1.6971.ebuild
deleted file mode 100644
index a451dc8c6..000000000
--- a/sci-biology/kmergenie/kmergenie-1.6971.ebuild
+++ /dev/null
@@ -1,44 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-inherit eutils
-
-PYTHON_COMPAT=( python{2_6,2_7} )
-
-DESCRIPTION="Estimate best k-mer length to be used in novo assemblies"
-HOMEPAGE="http://kmergenie.bx.psu.edu/";
-SRC_URI="http://kmergenie.bx.psu.edu/"${P}".tar.gz";
-
-LICENSE="CeCILL-1.1"
-SLOT="0"
-KEYWORDS="~amd64"
-IUSE=""
-
-# dev-python/docopt[${PYTHON_USEDEP}]
-DEPEND="dev-python/docopt
- dev-lang/R"
-RDEPEND="${DEPEND}"
-
-# Type `make` in the KmerGenie directory
-# To enable larger values of k, e.g. 200, type `make clean ; make k=200`.
-#
-# usage: ./kmergenie reads_file
-
-src_prepare(){
- sed -e 's#-O4##' -i makefile || die
- sed -e 's#third_party.##' -i kmergenie || die
-}
-
-src_compile(){
- make -j 1 || die
-}
-
-src_install(){
- dobin kmergenie specialk
- dodoc README
- # TODO: install also the python files
- insinto /usr/share/${PN}/R
- doins scripts/*
-}
diff --git a/sci-biology/kmergenie/kmergenie-1.7048.ebuild
b/sci-biology/kmergenie/kmergenie-1.7048.ebuild
new file mode 100644
index 000000000..3a0d6a105
--- /dev/null
+++ b/sci-biology/kmergenie/kmergenie-1.7048.ebuild
@@ -0,0 +1,22 @@
+# Copyright 1999-2021 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+PYTHON_COMPAT=( python3_{7,8,9} )
+
+inherit distutils-r1
+
+DESCRIPTION="Estimate best k-mer length to be used in novo assemblies"
+HOMEPAGE="http://kmergenie.bx.psu.edu/";
+SRC_URI="http://kmergenie.bx.psu.edu/${P}.tar.gz";
+
+LICENSE="CeCILL-1.1"
+SLOT="0"
+KEYWORDS="~amd64"
+
+DEPEND="
+ dev-python/docopt[${PYTHON_USEDEP}]
+ dev-lang/R
+"
+RDEPEND="${DEPEND}"
