commit: 4d0370cad9584f28fe77059521a641287a501d88 Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net> AuthorDate: Thu Feb 4 07:45:17 2021 +0000 Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net> CommitDate: Thu Feb 4 07:45:17 2021 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=4d0370ca
sci-biology/symap: version bump, EAIP bump Package-Manager: Portage-3.0.14, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net> sci-biology/symap/symap-4.0.ebuild | 29 -------------------------- sci-biology/symap/symap-5.0.6.ebuild | 40 ++++++++++++++++++++++++++++++++++++ 2 files changed, 40 insertions(+), 29 deletions(-) diff --git a/sci-biology/symap/symap-4.0.ebuild b/sci-biology/symap/symap-4.0.ebuild deleted file mode 100644 index bc485ff04..000000000 --- a/sci-biology/symap/symap-4.0.ebuild +++ /dev/null @@ -1,29 +0,0 @@ -# Copyright 1999-2014 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -DESCRIPTION="Synteny Mapping and Analysis Program" -HOMEPAGE="http://www.agcol.arizona.edu/software/symap/"; -SRC_URI="symap_40.tar.gz" - -LICENSE="GPL-2" -SLOT="0" -KEYWORDS="" -#KEYWORDS="~x86 ~amd64" -IUSE="" - -RESTRICT="fetch" - -pkg_nofetch() { - elog "Please register and download symap_${PV}.tar.gz (110MB)" - elog "at http://www.agcol.arizona.edu/software/symap/v${PV}/download/"; - elog "and place it in ${DISTDIR}" -} - -DEPEND=" - sci-biology/blat - sci-biology/mummer - sci-biology/muscle" -RDEPEND="${DEPEND} - virtual/jre" diff --git a/sci-biology/symap/symap-5.0.6.ebuild b/sci-biology/symap/symap-5.0.6.ebuild new file mode 100644 index 000000000..58b444b3d --- /dev/null +++ b/sci-biology/symap/symap-5.0.6.ebuild @@ -0,0 +1,40 @@ +# Copyright 1999-2021 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +DESCRIPTION="Synteny Mapping and Analysis Program" +HOMEPAGE="http://www.agcol.arizona.edu/software/symap/ https://github.com/csoderlund/SyMAP"; +SRC_URI="https://github.com/csoderlund/SyMAP/archive/v${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +# error: package netscape.javascript does not exist +KEYWORDS="" + +DEPEND=" + sci-biology/blat + sci-biology/mummer + sci-biology/muscle" +RDEPEND="${DEPEND} + >=virtual/jre-1.7:*" + +S="${WORKDIR}/SyMAP-${PV}/java" + +src_unpack() { + default + cd "${S}" + tar xvf classes_ext.tar.gz + cd ../ + tar xvf ext.tar.gz +} + +src_prepare() { + default + sed -e 's/#JAVA_PATH=\/usr/JAVA_PATH=\/usr/g' -i Makefile || die +} + +src_compile() { + emake class_dirs + emake +}
