commit: 9e1701c4483715ce8127247055278731d33a8079 Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net> AuthorDate: Thu Feb 4 05:08:13 2021 +0000 Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net> CommitDate: Thu Feb 4 05:08:13 2021 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=9e1701c4
sci-biology/sailfish: fix configure phase does not compile at the moment though so no keywords yet Package-Manager: Portage-3.0.14, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net> sci-biology/sailfish/sailfish-0.10.0.ebuild | 11 ++++++++++- 1 file changed, 10 insertions(+), 1 deletion(-) diff --git a/sci-biology/sailfish/sailfish-0.10.0.ebuild b/sci-biology/sailfish/sailfish-0.10.0.ebuild index 4aef4312e..8ba4d0cf7 100644 --- a/sci-biology/sailfish/sailfish-0.10.0.ebuild +++ b/sci-biology/sailfish/sailfish-0.10.0.ebuild @@ -8,7 +8,11 @@ inherit cmake multilib DESCRIPTION="Rapid Mapping-based Isoform Quantification from RNA-Seq Reads" HOMEPAGE="https://www.cs.cmu.edu/~ckingsf/software/sailfish/"; SRC_URI="https://github.com/kingsfordgroup/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz - https://github.com/COMBINE-lab/RapMap/archive/quasi-mph.zip"; + https://github.com/COMBINE-lab/RapMap/archive/quasi-mph.zip + https://github.com/gmarcais/Jellyfish/releases/download/v2.2.5/jellyfish-2.2.5.tar.gz + https://github.com/COMBINE-lab/sparsehash/archive/sparsehash-2.0.2.tar.gz + https://github.com/Kingsford-Group/libgff/archive/v1.0.tar.gz +" LICENSE="GPL-3+" SLOT="0" @@ -45,10 +49,15 @@ src_unpack() { mkdir -p "${S}/external" cp "${DISTDIR}/quasi-mph.zip" "${S}/external/rapmap.zip" || die mv "${WORKDIR}/RapMap-quasi-mph" "${S}/external/RapMap" || die + mv "${WORKDIR}/jellyfish-2.2.5" "${S}/external/jellyfish-2.2.5" || die + mv "${WORKDIR}/sparsehash-sparsehash-2.0.2" "${S}/external/sparsehash-sparsehash-2.0.2" || die + mv "${WORKDIR}/libgff-1.0" "${S}/external/libgff" || die mkdir -p "${S}/external/install/lib" cp "${EPREFIX}/usr/$(get_libdir)/libdivsufsort.so" "${S}/external/install/lib/" || die cp "${EPREFIX}/usr/$(get_libdir)/libdivsufsort64.so" "${S}/external/install/lib/" || die cp "${EPREFIX}/usr/$(get_libdir)/libjellyfish-2.0.so" "${S}/external/install/lib/" || die + mkdir -p "${S}/external/install/src/rapmap" + cp "${S}/external/RapMap/src/"* "${S}/external/install/src/rapmap" || die } src_prepare() {
