commit: effb881f64d5b18a2b2d05e9a28f3d54f9a0b484 Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net> AuthorDate: Mon Feb 1 11:00:08 2021 +0000 Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net> CommitDate: Mon Feb 1 11:00:08 2021 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=effb881f
sci-biology/jigsaw: define correct compile and install phases compilation itself fails, this needs a patch Package-Manager: Portage-3.0.14, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net> sci-biology/jigsaw/jigsaw-3.2.10.ebuild | 13 ------------- sci-biology/jigsaw/jigsaw-3.2.10m.ebuild | 28 ++++++++++++++++++++++++++++ 2 files changed, 28 insertions(+), 13 deletions(-) diff --git a/sci-biology/jigsaw/jigsaw-3.2.10.ebuild b/sci-biology/jigsaw/jigsaw-3.2.10.ebuild deleted file mode 100644 index 47ef93f7f..000000000 --- a/sci-biology/jigsaw/jigsaw-3.2.10.ebuild +++ /dev/null @@ -1,13 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -DESCRIPTION="Combine results from external gene predictors into final gene models" -HOMEPAGE="http://www.cbcb.umd.edu/software/jigsaw"; -SRC_URI="http://cbcb.umd.edu/software/jigsaw/${P}.tar.gz"; - -LICENSE="Artistic" -SLOT="0" -KEYWORDS="" -IUSE="" diff --git a/sci-biology/jigsaw/jigsaw-3.2.10m.ebuild b/sci-biology/jigsaw/jigsaw-3.2.10m.ebuild new file mode 100644 index 000000000..1a78ae08e --- /dev/null +++ b/sci-biology/jigsaw/jigsaw-3.2.10m.ebuild @@ -0,0 +1,28 @@ +# Copyright 1999-2021 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +DESCRIPTION="Combine results from external gene predictors into final gene models" +HOMEPAGE="https://www.cbcb.umd.edu/software/jigsaw"; +SRC_URI="https://www.cbcb.umd.edu/software/jigsaw/${P}.tar.gz"; + +LICENSE="Artistic" +SLOT="0" +KEYWORDS="" + +S="${WORKDIR}/${PN}-${PV//m}" + +src_compile() { + cd src/main || die + emake + cd ../../lib/oc1 + emake +} + +src_install() { + cd src/main || die + emake DESTDIR="${ED}" install + cd ../../lib/oc1 + emake DESTDIR="${ED}" install +}
