commit: 5d9e94b7d6dcf17e0158e3619e3921b9354dd702
Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Mon Feb 1 05:05:49 2021 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Mon Feb 1 05:06:50 2021 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=5d9e94b7
sci-biology/tablet: drop pack, py2 only
the py code is still py2 style
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>
sci-biology/tablet/files/response.varfile | 11 -----
sci-biology/tablet/metadata.xml | 12 ------
sci-biology/tablet/tablet-1.17.08.17.ebuild | 63 -----------------------------
sci-biology/tablet/tablet-9999.ebuild | 61 ----------------------------
4 files changed, 147 deletions(-)
diff --git a/sci-biology/tablet/files/response.varfile
b/sci-biology/tablet/files/response.varfile
deleted file mode 100644
index cfa2e6808..000000000
--- a/sci-biology/tablet/files/response.varfile
+++ /dev/null
@@ -1,11 +0,0 @@
-#install4j response file for Tablet x.xx.xx.xx
-#Mon Jan 24 11:35:29 GMT 2011
-executeLauncherAction$Boolean=false
-sys.programGroupDisabled$Boolean=true
-# somehow, this happens: ln -s
/scratch/var/tmp/portage/sci-biology/tablet-bin-1.11.02.18/image/opt/Tablet/tablet
/usr/local/bin/tablet
-# # that happens because
/scratch/var/tmp/portage/sci-biology/tablet-bin-1.11.02.18/image/opt/Tablet/.install4j/response.varfile
does not reflect our values
-sys.symlinkDir="${D}"usr/bin
-#sys.symlinkDir=/scratch/var/tmp/portage/sci-biology/tablet-bin-1.11.02.18/image/usr/bin
-sys.languageId=en
-sys.userHome="${D}"/../temp
-sys.installationDir="${D}"opt/Tablet
diff --git a/sci-biology/tablet/metadata.xml b/sci-biology/tablet/metadata.xml
deleted file mode 100644
index 138cb7705..000000000
--- a/sci-biology/tablet/metadata.xml
+++ /dev/null
@@ -1,12 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";>
-<pkgmetadata>
- <maintainer type="person">
- <email>[email protected]</email>
- <name>Martin Mokrejs</name>
- </maintainer>
- <maintainer type="project">
- <email>[email protected]</email>
- <name>Gentoo Biology Project</name>
- </maintainer>
-</pkgmetadata>
diff --git a/sci-biology/tablet/tablet-1.17.08.17.ebuild
b/sci-biology/tablet/tablet-1.17.08.17.ebuild
deleted file mode 100644
index 158caba78..000000000
--- a/sci-biology/tablet/tablet-1.17.08.17.ebuild
+++ /dev/null
@@ -1,63 +0,0 @@
-# Copyright 1999-2019 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit java-pkg-2 java-ant-2 python-r1
-
-[ "$PV" == "9999" ] && inherit git-r3
-
-DESCRIPTION="Viewer of next generation sequence assemblies and alignments"
-HOMEPAGE="https://ics.hutton.ac.uk/tablet";
-if [ "$PV" == "9999" ]; then
- EGIT_REPO_URI="https://github.com/cropgeeks/tablet.git";
- KEYWORDS=""
-else
- SRC_URI="https://github.com/cropgeeks/tablet/archive/${PV}.tar.gz ->
${P}.tar.gz"
- KEYWORDS="" # lacks lib/htsjdk-2.0.11.jar
-fi
-
-LICENSE="BSD-2"
-SLOT="0"
-IUSE=""
-
-REQUIRED_USE="${PYTHON_REQUIRED_USE}"
-
-DEPEND="${PYTHON_DEPS}
- >=virtual/jdk-1.8:*"
-RDEPEND="${PYTHON_DEPS}
- >=virtual/jre-1.8:*
- >=dev-java/commons-compress-1.4.1
- dev-java/htsjdk"
-# contains bundled sqlite-jdbc-3.8.6.jar, samtools-linux64.jar
-# sqlite-jdbc-3.8.6.jar is not dev-db/sqlite:3
-# samtools-linux64.jar is not sci-biology/samtools but 0.1.12a (r862)
-# needs htsjdk-2.0.11.jar
-
-src_compile(){
- mkdir -p classes || die
- ant jar || die
-}
-
-src_install() {
- java-pkg_dojar lib/tablet.jar
- java-pkg_dolauncher ${PN}
- java-pkg_dojar lib/tablet-resources.jar
- java-pkg_dojar lib/flamingo.jar
- java-pkg_dojar lib/scri-commons.jar
- java-pkg_dojar lib/samtools-all.jar
- if [ "${ABI}" == "amd64" ]; then
- java-pkg_dojar lib/samtools-linux64.jar
- fi
- if [ "${ABI}" == "x86" ]; then
- java-pkg_dojar lib/samtools-linux32.jar
- fi
- # is the tar.gz tarball missing by mistake lib/htsjdk*.jar ?
- # java-pkg_dojar lib/htsjdk*.jar # is htsjdk-2.11.0 in tablet-1.17.08.17
- java-pkg_dojar lib/sqlite-jdbc*.jar
-
- echo "PATH=${EPREFIX}/opt/Tablet" > 99Tablet
- doenvd 99Tablet
-}
diff --git a/sci-biology/tablet/tablet-9999.ebuild
b/sci-biology/tablet/tablet-9999.ebuild
deleted file mode 100644
index e9ae6890d..000000000
--- a/sci-biology/tablet/tablet-9999.ebuild
+++ /dev/null
@@ -1,61 +0,0 @@
-# Copyright 1999-2019 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit java-pkg-2 java-ant-2 python-r1
-
-[ "$PV" == "9999" ] && inherit git-r3
-
-DESCRIPTION="Viewer of next generation sequence assemblies and alignments"
-HOMEPAGE="https://ics.hutton.ac.uk/tablet";
-if [ "$PV" == "9999" ]; then
- EGIT_REPO_URI="https://github.com/cropgeeks/tablet.git";
- KEYWORDS=""
-else
- SRC_URI="https://github.com/cropgeeks/tablet/archive/${PV}.tar.gz ->
${P}.tar.gz"
- KEYWORDS=""
-fi
-
-LICENSE="BSD-2"
-SLOT="0"
-IUSE=""
-
-REQUIRED_USE="${PYTHON_REQUIRED_USE}"
-
-DEPEND="${PYTHON_DEPS}
- >=virtual/jdk-1.8:*"
-RDEPEND="${PYTHON_DEPS}
- >=virtual/jre-1.8:*
- >=dev-java/commons-compress-1.4.1"
-# contains bundled sqlite-jdbc-3.8.6.jar, samtools-linux64.jar,
htsjdk-2.11.0.jar
-# sqlite-jdbc-3.8.6.jar is not dev-db/sqlite:3
-# samtools-linux64.jar is not sci-biology/samtools but 0.1.12a (r862)
-
-#S="${WORKDIR}"
-src_compile(){
- mkdir -p classes || die
- ant jar || die
-}
-
-src_install() {
- java-pkg_dojar lib/tablet.jar
- java-pkg_dolauncher ${PN}
- java-pkg_dojar lib/tablet-resources.jar
- java-pkg_dojar lib/flamingo.jar
- java-pkg_dojar lib/scri-commons.jar
- java-pkg_dojar lib/samtools-all.jar
- if [ "${ABI}" == "amd64" ]; then
- java-pkg_dojar lib/samtools-linux64.jar
- fi
- if [ "${ABI}" == "x86" ]; then
- java-pkg_dojar lib/samtools-linux32.jar
- fi
- java-pkg_dojar lib/htsjdk*.jar # is htsjdk-2.11.0 in tablet-1.17.08.17
- java-pkg_dojar lib/sqlite-jdbc*.jar
-
- echo "PATH=${EPREFIX}/usr/share/${PN}" > 99Tablet
- doenvd 99Tablet
-}
