commit: 77bf8f4993e827bbc37bd81e6306a5cfa81107e2 Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net> AuthorDate: Tue Jan 19 15:15:29 2021 +0000 Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net> CommitDate: Tue Jan 19 15:15:29 2021 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=77bf8f49
sci-biology/bambino: remove pack, upstream gone Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net> profiles/package.mask | 1 - sci-biology/bambino/bambino-1.02.ebuild | 36 --------------------------------- sci-biology/bambino/bambino-1.06.ebuild | 36 --------------------------------- sci-biology/bambino/metadata.xml | 12 ----------- 4 files changed, 85 deletions(-) diff --git a/profiles/package.mask b/profiles/package.mask index 9abc3dd3c..c30fb5074 100644 --- a/profiles/package.mask +++ b/profiles/package.mask @@ -40,4 +40,3 @@ dev-java/hdf-java # mask unfetchable packages until someone fixes. sci-biology/aghermann sci-biology/argo-bin -sci-biology/bambino diff --git a/sci-biology/bambino/bambino-1.02.ebuild b/sci-biology/bambino/bambino-1.02.ebuild deleted file mode 100644 index bfbf3c42d..000000000 --- a/sci-biology/bambino/bambino-1.02.ebuild +++ /dev/null @@ -1,36 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -inherit java-pkg-2 eutils - -DESCRIPTION="display SAM/BAM files and for SNP/indel detection, report coverage in .wig files" -HOMEPAGE="https://cgwb.nci.nih.gov/goldenPath/bamview/documentation/index.html - https://cgwb.nci.nih.gov/goldenPath/bamview/documentation/bam_utils.html"; - -# bug #377305 -SRC_URI="https://cgwb.nci.nih.gov/cgi-bin/bambino?download_bambino_jar=bundle -> bambino_core_1.02.jar - https://cgwb.nci.nih.gov/cgi-bin/bambino?download_bambino_jar=core -> bambino_bundle_1.02.jar" - -LICENSE="bambino" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" - -DEPEND=">=virtual/jdk-1.6:*" -RDEPEND="${DEPEND} - >=virtual/jre-1.6:* - sci-biology/picard - dev-java/jdbc-mysql" - -src_install(){ - insinto "${DESTDIR}"/usr/share/"${PN}"/lib - doins "${DISTDIR}"/bambino_core_"${PV}".jar - doins "${DISTDIR}"/bambino_bundle_"${PV}".jar - - einfo "bambino can be run using 'java -jar /usr/share/bambino/lib/bambino_bundle_1.02.jar'" - einfo " or 'java -jar /usr/share/bambino/lib/bambino_core_1.02.jar'" - einfo "More info at "${HOMEPAGE} - -} diff --git a/sci-biology/bambino/bambino-1.06.ebuild b/sci-biology/bambino/bambino-1.06.ebuild deleted file mode 100644 index 7e51cf0b2..000000000 --- a/sci-biology/bambino/bambino-1.06.ebuild +++ /dev/null @@ -1,36 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -inherit java-pkg-2 eutils - -DESCRIPTION="display SAM/BAM files and for SNP/indel detection, report coverage in .wig files" -HOMEPAGE="https://cgwb.nci.nih.gov/goldenPath/bamview/documentation/index.html - https://cgwb.nci.nih.gov/goldenPath/bamview/documentation/bam_utils.html"; - -# bug #377305 -SRC_URI="https://cgwb.nci.nih.gov/cgi-bin/bambino?download_bambino_jar=bundle -> bambino_core_1.06.jar - https://cgwb.nci.nih.gov/cgi-bin/bambino?download_bambino_jar=core -> bambino_bundle_1.06.jar" - -LICENSE="bambino" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" - -DEPEND=">=virtual/jdk-1.6:*" -RDEPEND="${DEPEND} - >=virtual/jre-1.6:* - sci-biology/picard - dev-java/jdbc-mysql" - -src_install(){ - insinto "${DESTDIR}"/usr/share/"${PN}"/lib - doins "${DISTDIR}"/bambino_core_"${PV}".jar - doins "${DISTDIR}"/bambino_bundle_"${PV}".jar - - einfo "bambino can be run using 'java -jar /usr/share/bambino/lib/bambino_bundle_1.06.jar'" - einfo " or 'java -jar /usr/share/bambino/lib/bambino_core_1.06.jar'" - einfo "More info at "${HOMEPAGE} - -} diff --git a/sci-biology/bambino/metadata.xml b/sci-biology/bambino/metadata.xml deleted file mode 100644 index 138cb7705..000000000 --- a/sci-biology/bambino/metadata.xml +++ /dev/null @@ -1,12 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> -<pkgmetadata> - <maintainer type="person"> - <email>[email protected]</email> - <name>Martin Mokrejs</name> - </maintainer> - <maintainer type="project"> - <email>[email protected]</email> - <name>Gentoo Biology Project</name> - </maintainer> -</pkgmetadata>
