commit: 8cb5fae65ab7f750a2c573f6c7d742de567e7239 Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net> AuthorDate: Tue Jan 19 13:20:44 2021 +0000 Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net> CommitDate: Tue Jan 19 13:20:54 2021 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=8cb5fae6
sci-biology/graf-bin: fix fetch, fix install, EAPI bump Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net> profiles/package.mask | 1 - ...raf-bin-20171212.ebuild => graf-bin-2.4.ebuild} | 22 ++++++++-------------- 2 files changed, 8 insertions(+), 15 deletions(-) diff --git a/profiles/package.mask b/profiles/package.mask index db8b97d63..7b4aeba0c 100644 --- a/profiles/package.mask +++ b/profiles/package.mask @@ -67,4 +67,3 @@ sci-biology/generecon sci-biology/genomeview-bin sci-biology/gfftools sci-biology/glean -sci-biology/graf-bin diff --git a/sci-biology/graf-bin/graf-bin-20171212.ebuild b/sci-biology/graf-bin/graf-bin-2.4.ebuild similarity index 51% rename from sci-biology/graf-bin/graf-bin-20171212.ebuild rename to sci-biology/graf-bin/graf-bin-2.4.ebuild index 93d554892..8f73e8121 100644 --- a/sci-biology/graf-bin/graf-bin-20171212.ebuild +++ b/sci-biology/graf-bin/graf-bin-2.4.ebuild @@ -1,34 +1,28 @@ -# Copyright 1999-2018 Gentoo Foundation +# Copyright 1999-2021 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=5 +EAPI=7 inherit perl-module DESCRIPTION="Find closely related subjects using SNP genotype data, validate pedigree file" -HOMEPAGE="http://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/Software.cgi"; -SRC_URI="http://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/GetZip.cgi?zip_name=GRAF_files.zip -> ${P}.tar.gz" -# the .zip is indeed .tar.gz +HOMEPAGE="https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/Software.cgi"; +SRC_URI="https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/GetZip.cgi?zip_name=GRAF_files.zip -> ${P}.tar.gz" LICENSE="public-domain" SLOT="0" -KEYWORDS="~amd64" # 64bit exe only -IUSE="" - -DEPEND="" -RDEPEND="${DEPEND}" +KEYWORDS="~amd64" S="${WORKDIR}" src_prepare(){ + default sed -e 's#/usr/local/bin/perl#/usr/bin/env perl#' -i *.pl || die # there is not perl_fix_shebang } src_install(){ - dobin graf graf_dups *.pl - dodoc GRAF_ReadMe_*.docx GRAF-popDocumentation*.docx - insinto /usr/share/"${PN}" - doins *.txt *.bed *.bim *.fam + dobin graf graf_dups + perl_domodule *.pl } pkg_postinst(){
