commit: 0a3193bdb34b5d005a47c68c6f049d990be406a6 Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net> AuthorDate: Tue Jan 19 11:22:47 2021 +0000 Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net> CommitDate: Tue Jan 19 11:22:59 2021 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=0a3193bd
sci-biology/MolBioLib: fix fetching Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net> profiles/package.mask | 1 - sci-biology/MolBioLib/MolBioLib-5.ebuild | 20 ++++++++++---------- 2 files changed, 10 insertions(+), 11 deletions(-) diff --git a/profiles/package.mask b/profiles/package.mask index 12a2d067b..c0e7743a2 100644 --- a/profiles/package.mask +++ b/profiles/package.mask @@ -84,4 +84,3 @@ sci-biology/manatee-igs sci-biology/manatee-jcvi sci-biology/mavid sci-biology/MeV -sci-biology/MolBioLib diff --git a/sci-biology/MolBioLib/MolBioLib-5.ebuild b/sci-biology/MolBioLib/MolBioLib-5.ebuild index ac54cfcaf..bbbbeb605 100644 --- a/sci-biology/MolBioLib/MolBioLib-5.ebuild +++ b/sci-biology/MolBioLib/MolBioLib-5.ebuild @@ -1,8 +1,13 @@ -# Copyright 1999-2019 Gentoo Authors +# Copyright 1999-2021 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=7 +DOCS_BUILDER="doxygen" +DOCS_DEPEND="media-gfx/graphviz" + +inherit docs + DESCRIPTION="C++11 framework for bioinformatics tasks" HOMEPAGE="https://sourceforge.net/projects/molbiolib"; SRC_URI="https://sourceforge.net/projects/molbiolib/files/MolBioLib_public.version${PV}.tar.gz"; @@ -10,7 +15,6 @@ SRC_URI="https://sourceforge.net/projects/molbiolib/files/MolBioLib_public.versi LICENSE="GPL-3" SLOT="0" KEYWORDS="" # does not build -IUSE="doc" # contains bundled samtools-0.1.18 and bamtools (pezmaster31-bamtools-d553a62) # which contains jsoncpp, also needs app-doc/doxygen @@ -25,16 +29,12 @@ CDEPEND="doc? ( app-doc/doxygen )" S="${WORKDIR}"/MolBioLib -src_prepare(){ - # edit MakeAllApps.pl - default -} - src_compile(){ perl MakeAllApps.pl || die + docs_compile } -src_install(){ - # TODO: install the app somehow - use doc && dodoc -r docs/doxygen/* +src_install() { + einstalldocs + # TODO: install this }
