commit: b6ef36018a0a32895771f0ce4268d4fdd2a65323
Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Tue Jan 19 11:00:09 2021 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Tue Jan 19 11:00:21 2021 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=b6ef3601
sci-biology/mrsfast: fix fetch, version bump
Package-Manager: Portage-3.0.13, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>
profiles/package.mask | 1 -
.../{mrsfast-2.6.0.4.ebuild => mrsfast-3.4.2.ebuild} | 14 +++++++-------
2 files changed, 7 insertions(+), 8 deletions(-)
diff --git a/profiles/package.mask b/profiles/package.mask
index 463264771..650fb6a4b 100644
--- a/profiles/package.mask
+++ b/profiles/package.mask
@@ -87,4 +87,3 @@ sci-biology/MeV
sci-biology/MolBioLib
sci-biology/mreps
sci-biology/mRNAmarkup
-sci-biology/mrsfast
diff --git a/sci-biology/mrsfast/mrsfast-2.6.0.4.ebuild
b/sci-biology/mrsfast/mrsfast-3.4.2.ebuild
similarity index 58%
rename from sci-biology/mrsfast/mrsfast-2.6.0.4.ebuild
rename to sci-biology/mrsfast/mrsfast-3.4.2.ebuild
index bdd86b273..91f7d771c 100644
--- a/sci-biology/mrsfast/mrsfast-2.6.0.4.ebuild
+++ b/sci-biology/mrsfast/mrsfast-3.4.2.ebuild
@@ -1,20 +1,20 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
-EAPI=5
+EAPI=7
-inherit eutils toolchain-funcs
+inherit toolchain-funcs
DESCRIPTION="Micro Read Fast Alignment Search Tool"
-HOMEPAGE="http://mrsfast.sourceforge.net/Home";
-SRC_URI="mirror://sourceforge/mrsfast/${PV}/${P}.zip"
+HOMEPAGE="https://sfu-compbio.github.io/mrsfast/";
+SRC_URI="https://github.com/sfu-compbio/mrsfast/archive/v${PV}.tar.gz ->
${P}.tar.gz"
LICENSE="BSD"
SLOT="0"
-IUSE=""
-KEYWORDS="~amd64"
+KEYWORDS=""
src_prepare() {
+ default
sed \
-e "s:gcc:$(tc-getCC) ${LDFLAGS}:g" \
-e '/^CFLAGS/d' \
